View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0773_low_24 (Length: 269)
Name: NF0773_low_24
Description: NF0773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0773_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 17734657 - 17734414
Alignment:
| Q |
1 |
agaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17734657 |
agaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggca |
17734558 |
T |
|
| Q |
101 |
gcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagag |
200 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
17734557 |
gtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataacaagtgtttggtgatgttcagag |
17734458 |
T |
|
| Q |
201 |
aaacgttggtgaggttggtcagtgattttccgatgagattctgc |
244 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17734457 |
aaacgttggtgaggtttgtcagtgattttccgatgagattctgc |
17734414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 17743897 - 17743656
Alignment:
| Q |
1 |
agaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggta |
100 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17743897 |
agaagaaacaacctgagagcataacgatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggta |
17743798 |
T |
|
| Q |
101 |
gcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
17743797 |
gcgatcataatgagtacggtgttgagcgataatggtgaaaacacaatgttcttttcattgagtttttgattggataacaagtgtttggtgatgttcagag |
17743698 |
T |
|
| Q |
201 |
aaacgttggtgaggttggtcagtgattttccgatgagattct |
242 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||||||| |
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| T |
17743697 |
aaacgttggtgaatttggtgagtgattttccgatgagattct |
17743656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 16720673 - 16720430
Alignment:
| Q |
1 |
agaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
16720673 |
agaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggagccggta |
16720574 |
T |
|
| Q |
101 |
gcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagag |
200 |
Q |
| |
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|| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||||| | |
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| T |
16720573 |
gcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgttcatgg |
16720474 |
T |
|
| Q |
201 |
aaacgttggtgaggttggtcagtgattttccgatgagattctgc |
244 |
Q |
| |
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||| |||||| ||||| || | |||||||||||||||||||||| |
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| T |
16720473 |
aaatgttggttaggtttgtaaatgattttccgatgagattctgc |
16720430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 17697687 - 17697444
Alignment:
| Q |
1 |
agaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
17697687 |
agaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggagccggta |
17697588 |
T |
|
| Q |
101 |
gcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagag |
200 |
Q |
| |
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|| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||||| | |
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| T |
17697587 |
gcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgttcatgg |
17697488 |
T |
|
| Q |
201 |
aaacgttggtgaggttggtcagtgattttccgatgagattctgc |
244 |
Q |
| |
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||| |||||| ||||| || | |||||||||||||||||||||| |
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| T |
17697487 |
aaatgttggttaggtttgtaaatgattttccgatgagattctgc |
17697444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 17716606 - 17716363
Alignment:
| Q |
1 |
agaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggta |
100 |
Q |
| |
|
||||||||| ||| ||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
17716606 |
agaagaaaccagccgagagtataaggatttgagattaccgggggattctgactggaggaaggagagaagttgtttttgagtgggaccctcggagccggta |
17716507 |
T |
|
| Q |
101 |
gcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagag |
200 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||||||| | |
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| T |
17716506 |
gcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgttcatgg |
17716407 |
T |
|
| Q |
201 |
aaacgttggtgaggttggtcagtgattttccgatgagattctgc |
244 |
Q |
| |
|
|||||||||| ||||| || |||||||||| ||||||||||||| |
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|
| T |
17716406 |
aaacgttggttaggtttgtgagtgattttctgatgagattctgc |
17716363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 16729546 - 16729303
Alignment:
| Q |
1 |
agaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggta |
100 |
Q |
| |
|
||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||| |
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| T |
16729546 |
agaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggagctggta |
16729447 |
T |
|
| Q |
101 |
gcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagag |
200 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||||||| | |
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|
| T |
16729446 |
gcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatgg |
16729347 |
T |
|
| Q |
201 |
aaacgttggtgaggttggtcagtgattttccgatgagattctgc |
244 |
Q |
| |
|
|||||||||| ||||| || |||||||||| ||||||||||||| |
|
|
| T |
16729346 |
aaacgttggttaggtttgtgagtgattttctgatgagattctgc |
16729303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 17706618 - 17706375
Alignment:
| Q |
1 |
agaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggta |
100 |
Q |
| |
|
||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||| |
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| T |
17706618 |
agaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggagctggta |
17706519 |
T |
|
| Q |
101 |
gcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagag |
200 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||||||| | |
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|
| T |
17706518 |
gcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatgg |
17706419 |
T |
|
| Q |
201 |
aaacgttggtgaggttggtcagtgattttccgatgagattctgc |
244 |
Q |
| |
|
|||||||||| ||||| || |||||||||| ||||||||||||| |
|
|
| T |
17706418 |
aaacgttggttaggtttgtgagtgattttctgatgagattctgc |
17706375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 46497451 - 46497386
Alignment:
| Q |
40 |
ggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgat |
105 |
Q |
| |
|
|||||||| || ||||||||| ||||||||| | ||||||||| ||||||||||| |||||||| |
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| T |
46497451 |
ggtggatttggattggaggaagttgagaagttgttgttgtgtggggccctcggagccagtagcgat |
46497386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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