View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0773_low_27 (Length: 255)
Name: NF0773_low_27
Description: NF0773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0773_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 32348394 - 32348620
Alignment:
| Q |
1 |
cagttctcacctaccttgttcactgttttccctccttactttgtctcataacaataacagtattaggtgatttctaaacatatgtttttctatttatt-c |
99 |
Q |
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| T |
32348394 |
cagttctcacctaccttgttcactgttttccctccttaatttgtatcataacaataacagtattaggtgatttctaaacatatgtttttatatttatttc |
32348493 |
T |
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| Q |
100 |
taaaacataagatattatattattaatctcacactaatacgaagaaaaacaatagagtataattattgaagggttgaatacaaacagataaagcaaaagt |
199 |
Q |
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| T |
32348494 |
taaaacataagatattatattattaatctcacaccaatacgaagaaaaacaatagagtataattattgaagggttgaatacaaacagataaagcaaaagt |
32348593 |
T |
|
| Q |
200 |
aacggcatatagtagaaacatagtatc |
226 |
Q |
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| T |
32348594 |
aaaggcatatagtagaaacatagtatc |
32348620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 31265867 - 31265744
Alignment:
| Q |
67 |
gtgatttctaaacatatgtttttctatttattcta-aaacataagatattatattattaatctcacactaatacgaagaaaaacaatagagtataattat |
165 |
Q |
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| T |
31265867 |
gtgatttcttaacatatgcttttttatttatttttgaaacataagatattttattgtttatctaataataataacaagaaaaacaattgaccggaactat |
31265768 |
T |
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| Q |
166 |
tgaagggttgaatacaaacagata |
189 |
Q |
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| T |
31265767 |
tgaagggttgaaaactaacagata |
31265744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 49441923 - 49441973
Alignment:
| Q |
137 |
tacgaagaaaaacaatagagtataattattgaagggttgaatacaaacaga |
187 |
Q |
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| T |
49441923 |
tacgaagaaaagcaatagagtggaattattgaagggttgaaaataaacaga |
49441973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 40024947 - 40024910
Alignment:
| Q |
50 |
aacaataacagtattaggtgatttctaaacatatgttt |
87 |
Q |
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| T |
40024947 |
aacaataacaatgttaggtgatttctaaacatatgttt |
40024910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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