View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0773_low_28 (Length: 253)
Name: NF0773_low_28
Description: NF0773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0773_low_28 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 29 - 253
Target Start/End: Original strand, 20065243 - 20065467
Alignment:
| Q |
29 |
agtgttgttatctttcctgcaagaggataatagtataccaaagcttttgagagtgcttctttgattacacaagcagggtctttttggtcatttgggaaat |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20065243 |
agtgttgttatctttcctgcaagaggataatagtataccaaagcttttgagagtgcttctttgattacacaagcagggtcttttttgtcatttgggaaat |
20065342 |
T |
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| Q |
129 |
caagatttggtttgtagacataaattgtttggcaaagaatgttgaggttaggatcattgtcaatggtggaaagtgaaagaatttcagaaggtgtgggctt |
228 |
Q |
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| T |
20065343 |
caagatttggtttgtagacataaattgtttggcaaagaatgttgatgttaggatcattgtcaatggtggaaagtgaaagaatttcagaaggtgtgggcat |
20065442 |
T |
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| Q |
229 |
ggagggtttaacgatcacaatgtcc |
253 |
Q |
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|||||||||||| |||||||||||| |
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| T |
20065443 |
ggagggtttaacaatcacaatgtcc |
20065467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 20051400 - 20051579
Alignment:
| Q |
30 |
gtgttgttatctttcctgcaagaggataatagtataccaaagcttttgagagtgcttctttgattacacaagcagggtctttttggtcatttgggaaatc |
129 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||| |||||||| | |||||| || ||||||||| |||||||||||||||||||||| || |
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| T |
20051400 |
gtgttgttagctttcctgcaagaggataatagtaaaccaaagcctttgagagggattctttaatcacacaagcatggtctttttggtcatttgggaactc |
20051499 |
T |
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| Q |
130 |
aagatttggtttgtagacataaattgtttggcaaagaatgttgaggttaggatcattgtcaatggtggaaagtgaaagaatttcag |
215 |
Q |
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| T |
20051500 |
aagattggatttgtaaacataaattgtttgatagagaatgttgatgttagga------tcaatagtggaaagtgaaagaatttcag |
20051579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 20060373 - 20060476
Alignment:
| Q |
29 |
agtgttgttatctttcctgcaagaggataatagtataccaaagcttttgagagtgcttctttgattacacaagcagggtctttttggtcatttgggaaat |
128 |
Q |
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|||||||||| |||||||||||||||||||| ||| |||||| | |||||| ||||||||||||| |||||||||||||||||||||| |||| |||||| |
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| T |
20060373 |
agtgttgttagctttcctgcaagaggataattgtaaaccaaaacctttgagggtgcttctttgatcacacaagcagggtctttttggttattttggaaat |
20060472 |
T |
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| Q |
129 |
caag |
132 |
Q |
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|||| |
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| T |
20060473 |
caag |
20060476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 27046637 - 27046690
Alignment:
| Q |
44 |
cctgcaagaggataatagtataccaaagcttttgagagtgcttctttgattaca |
97 |
Q |
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| T |
27046637 |
cctgcaagaggataataataatccaaagcctttgagagtgcttctttgaataca |
27046690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 27100248 - 27100294
Alignment:
| Q |
44 |
cctgcaagaggataatagtataccaaagcttttgagagtgcttcttt |
90 |
Q |
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| T |
27100248 |
cctgcaagaggataataataaaacaaagcctttgagagtgcttcttt |
27100294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 27042614 - 27042667
Alignment:
| Q |
44 |
cctgcaagaggataatagtataccaaagcttttgagagtgcttctttgattaca |
97 |
Q |
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||||||||||||||||| || ||||||| |||||||| |||||||||| |||| |
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| T |
27042614 |
cctgcaagaggataataataatccaaagcctttgagagcgcttctttgaataca |
27042667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 27086762 - 27086815
Alignment:
| Q |
44 |
cctgcaagaggataatagtataccaaagcttttgagagtgcttctttgattaca |
97 |
Q |
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||||||||||||||||| || ||||||| |||||||| |||||||||| |||| |
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| T |
27086762 |
cctgcaagaggataataataatccaaagcctttgagagcgcttctttgaataca |
27086815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 27106755 - 27106808
Alignment:
| Q |
44 |
cctgcaagaggataatagtataccaaagcttttgagagtgcttctttgattaca |
97 |
Q |
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||||||| ||||||||| || | |||||||||||| ||||||||||||| |||| |
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| T |
27106755 |
cctgcaaaaggataataataaaacaaagcttttgaaagtgcttctttgaataca |
27106808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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