View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0773_low_3 (Length: 406)
Name: NF0773_low_3
Description: NF0773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0773_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 21 - 395
Target Start/End: Complemental strand, 2831879 - 2831505
Alignment:
| Q |
21 |
atcatcaataggtgtgactaagtgtaacgaattgccatggaggtaagcaaagtgnnnnnnnctatgtaaaatatgttgatagatggacttctctcagaaa |
120 |
Q |
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| T |
2831879 |
atcatcaataggtgtgactaagtgtaacgaattgccatggaggtaagcaaagtgaaaaaaactatgtaaaatatgttgatagatggacttctctcagaaa |
2831780 |
T |
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| Q |
121 |
cttgttaatgttcatttttcacgtagcattatgaacctatttggtgtcttgaagtataagaagatgggggaggaatttcttcagaattctggctttccat |
220 |
Q |
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| T |
2831779 |
cttgttaatgttcatttttcacgtagcattatgaacctatttggtgtcttgaagtataagaagatgggggaggaatttcttcagaattctggctttccat |
2831680 |
T |
|
| Q |
221 |
atactataattaggtaagatgaaaatgttgtagatattataacattgataaccaaaatgttgaatgttcccgaaatctcctcatatcgtgtatttaaatg |
320 |
Q |
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| T |
2831679 |
atactataattaggtaagatgaaaatgttgtagatattataacattgataaccaaaatgttgaatgttcccgaaatctcctcatatcgtgtatttaaatg |
2831580 |
T |
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| Q |
321 |
cattttagacctggaagattgacagatggaccatacacatcttatgatctcaatacattactcaaagcaacagct |
395 |
Q |
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| T |
2831579 |
cattttagacctggaagattgacagatggaccatacacatcttatgatctcaatacattactcaaagcaacagct |
2831505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 95 - 395
Target Start/End: Complemental strand, 2790535 - 2790246
Alignment:
| Q |
95 |
gttgatagatggacttctctcagaaacttgttaatgttcatttttcacgtagcattatgaacctatttggtgtcttgaagtataagaagatgggggagga |
194 |
Q |
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| T |
2790535 |
gttgataaatggacttctctcatagacttgttaatcttcatttttcacgcagcattatgaacctattcggtgtcttgaagtataagaagatgggggagga |
2790436 |
T |
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| Q |
195 |
atttcttcagaattctggctttccatatactataattaggtaagatgaaaatgttgtagatattataacattgataaccaaaatgttgaatgttcccgaa |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||| || || | ||||||||| |||||| ||||||||||||||||||||| |||| |
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| T |
2790435 |
atttcttcagaattctggctttccatatactataattaagtgagctaaaaatgttggagatat-----------taaccaaaatgttgaatgttctcgaa |
2790347 |
T |
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| Q |
295 |
atctcctcatatcgtgtatttaaatgcattttagacctggaagattgacagatggaccatacacatcttatgatctcaatacattactcaaagcaacagc |
394 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2790346 |
atctcctcatatggtgtatttaaatggattttagacctggaaggttgacagatggaccatacacatcttatgatctcaatacattactcaaagcaacagc |
2790247 |
T |
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