View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0773_low_30 (Length: 251)

Name: NF0773_low_30
Description: NF0773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0773_low_30
NF0773_low_30
[»] chr4 (12 HSPs)
chr4 (9-248)||(27292966-27293205)
chr4 (9-248)||(4919035-4919273)
chr4 (23-247)||(42976352-42976575)
chr4 (50-117)||(45989609-45989676)
chr4 (50-127)||(20133410-20133487)
chr4 (24-117)||(42069019-42069112)
chr4 (23-127)||(55919359-55919463)
chr4 (50-117)||(47031458-47031525)
chr4 (180-244)||(24228273-24228337)
chr4 (23-127)||(28679508-28679612)
chr4 (56-127)||(15531216-15531287)
chr4 (183-244)||(15531344-15531405)
[»] chr3 (15 HSPs)
chr3 (9-248)||(50650350-50650589)
chr3 (9-244)||(12938425-12938660)
chr3 (23-247)||(31658792-31659015)
chr3 (60-244)||(29833299-29833483)
chr3 (53-244)||(33216657-33216848)
chr3 (50-127)||(39833230-39833307)
chr3 (183-244)||(53282176-53282237)
chr3 (23-127)||(5232946-5233050)
chr3 (183-243)||(36950291-36950351)
chr3 (56-127)||(29703541-29703612)
chr3 (56-127)||(36950163-36950234)
chr3 (187-244)||(29703673-29703730)
chr3 (184-244)||(20104205-20104265)
chr3 (56-127)||(53282294-53282365)
chr3 (184-244)||(5232829-5232889)
[»] chr2 (13 HSPs)
chr2 (9-248)||(14096276-14096515)
chr2 (23-140)||(18977083-18977200)
chr2 (23-127)||(14810087-14810191)
chr2 (23-127)||(15330735-15330839)
chr2 (23-127)||(37261669-37261773)
chr2 (23-127)||(16429864-16429968)
chr2 (23-127)||(17690604-17690708)
chr2 (168-244)||(18977203-18977279)
chr2 (23-127)||(37078947-37079051)
chr2 (183-243)||(7089108-7089168)
chr2 (183-243)||(33755203-33755263)
chr2 (74-127)||(7089225-7089278)
chr2 (184-244)||(37078830-37078890)
[»] chr7 (8 HSPs)
chr7 (9-248)||(19436692-19436931)
chr7 (9-248)||(29833903-29834142)
chr7 (99-215)||(29258440-29258556)
chr7 (23-127)||(45972423-45972527)
chr7 (50-117)||(6442636-6442703)
chr7 (50-116)||(34094118-34094184)
chr7 (50-127)||(29243380-29243455)
chr7 (23-127)||(47327942-47328046)
[»] chr1 (6 HSPs)
chr1 (10-248)||(27286184-27286422)
chr1 (9-247)||(52385772-52386010)
chr1 (50-213)||(39241614-39241773)
chr1 (23-127)||(12981521-12981625)
chr1 (23-127)||(45348240-45348344)
chr1 (51-117)||(45325635-45325701)
[»] chr5 (8 HSPs)
chr5 (9-247)||(30624885-30625123)
chr5 (9-244)||(41413401-41413636)
chr5 (9-244)||(1828436-1828671)
chr5 (9-244)||(40313901-40314136)
chr5 (53-244)||(31482071-31482262)
chr5 (23-127)||(24788296-24788400)
chr5 (183-244)||(39884578-39884639)
chr5 (60-127)||(39884696-39884763)
[»] chr6 (5 HSPs)
chr6 (9-247)||(12938663-12938901)
chr6 (9-247)||(33694802-33695039)
chr6 (50-229)||(28138039-28138217)
chr6 (187-243)||(12466425-12466481)
chr6 (93-173)||(14532051-14532131)
[»] chr8 (7 HSPs)
chr8 (53-244)||(13802682-13802873)
chr8 (53-177)||(23613574-23613699)
chr8 (53-174)||(23614215-23614338)
chr8 (23-127)||(531684-531788)
chr8 (183-243)||(3879600-3879660)
chr8 (50-127)||(30945452-30945527)
chr8 (56-127)||(3879472-3879543)
[»] scaffold0166 (1 HSPs)
scaffold0166 (23-127)||(30679-30783)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 27293205 - 27292966
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27293205 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 27293106  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  27293105 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatatgacgtgtcatggcttgaaatct 27293006  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattc 248  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27293005 gattggctgaattaaacgacttcaccgaaaaagtcaattc 27292966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 4919273 - 4919035
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  4919273 gagatgaatgagtgataaagaggaaatagaattggaaaaataagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacc 4919174  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4919173 attaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatct 4919074  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattc 248  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  4919073 gattggctgaatt-aacgacttcaccgaaaaagtcaattc 4919035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 42976575 - 42976352
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| |||||||||  |  | ||||||||||||||||||| ||||||||||  |||||||||||||||  ||||||||||||||||||| | ||    
T  42976575 ataaagaggagagagaattgatactagaagaaaaatcatgtgtagatggtgtaccacattaacatagagaccaagtaaatctaaccgttaagatcataaa 42976476  T
Q  123 ataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaatta 222  Q
    | ||||||||||||||||| || |||| | |||||||||||||||| ||||| |  | |||| |||||||||||  |||||||||||||||| |||||||    
T  42976475 agaaacttgtctatggtgggacttatggagcaagtgatccatattaaaatttat-tctacatgtgacgtgtcatctcttgaaatctgattggttgaatta 42976377  T
Q  223 aacgacttcaccgaaaaagtcaatt 247  Q
    ||||||| || |||| |||||||||    
T  42976376 aacgactgcatcgaagaagtcaatt 42976352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 45989609 - 45989676
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatc 117  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||||  |||||||||||||||||||    
T  45989609 aagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatc 45989676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 20133487 - 20133410
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| |||||||||    
T  20133487 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 20133410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 42069019 - 42069112
Alignment:
Q  24 taaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatc 117  Q
    ||||||||| | ||||||| ||  | ||||||||||||||||||| ||| |||||| |||||||||||| |||  |||||||||||||||||||    
T  42069019 taaagaggagaaagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagatc 42069112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 55919359 - 55919463
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||  |||| ||| ||||    
T  55919359 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaactattaaaatcatgaa 55919458  T
Q  123 ataaa 127  Q
    |||||    
T  55919459 ataaa 55919463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 47031458 - 47031525
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatc 117  Q
    ||||||||||||||||||| ||| |||||| |||||||||||| |||  |||||||||| ||||||||    
T  47031458 aagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccattaagatc 47031525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 24228273 - 24228337
Alignment:
Q  180 aacatctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    |||||||||||||||||| ||||||||||||||||   | | |||||||||||||||| ||||||    
T  24228273 aacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtca 24228337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 28679612 - 28679508
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| ||| |||||| |||||||||||| |||  |||| ||||  |||||||| | ||    
T  28679612 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaagtaaatttaactattaagatcataaa 28679513  T
Q  123 ataaa 127  Q
    |||||    
T  28679512 ataaa 28679508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 15531216 - 15531287
Alignment:
Q  56 aatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    |||||||||||||  || |||||| ||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  15531216 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 15531287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 15531344 - 15531405
Alignment:
Q  183 atctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    ||||||||| |||| ||||||||||||||||| | | | |||||||||||| ||||||||||    
T  15531344 atctgacgtatcatcacttgaaatctgattggttcattcaaacgacttcactgaaaaagtca 15531405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 50650350 - 50650589
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50650350 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 50650449  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50650450 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatct 50650549  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattc 248  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  50650550 gattggctgaattaaacgactttaccgaaaaagtcaattc 50650589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 12938660 - 12938425
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||| ||||||||||||||||| ||||| ||||||  ||||||||||||||||||| |||||||||||| |||||||||| |||||  ||| ||||||    
T  12938660 gagatgcatgagtgataaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 12938561  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  12938560 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatct 12938461  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    ||||||   | | |||||||||||||||| ||||||    
T  12938460 gattggtccattcaaacgacttcaccgaagaagtca 12938425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 31658792 - 31659015
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| |||||||||  |  | ||||||||||||||||||| |||||||||| ||||||||||||||||  ||||||||||||||||||| | ||    
T  31658792 ataaagaggagagagaattgatattagaagaaaaatcatgtgtagatggtgtaccacaataacatagagaccaagtaaatctaaccgttaagatcataaa 31658891  T
Q  123 ataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaatta 222  Q
    | ||||||||||||||||| || |||| | |||||||||||||||||||||| | || |||| ||| |||||||  |||||||||||||||| |||||||    
T  31658892 agaaacttgtctatggtgggacttatggagcaagtgatccatattagaatttat-cctacatgtgatgtgtcatctcttgaaatctgattggttgaatta 31658990  T
Q  223 aacgacttcaccgaaaaagtcaatt 247  Q
    ||||||| ||||||| |||||||||    
T  31658991 aacgactgcaccgaagaagtcaatt 31659015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 244
Target Start/End: Complemental strand, 29833483 - 29833299
Alignment:
Q  60 atgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtga 159  Q
    ||||| ||| |||||||||  ||| |||||| ||||||||||||||||| |||||||| | || ||||  |||||||||||||||||||| | |||||||    
T  29833483 atgtgaagatggtgtaccataataccatagaaaccaaacaaatctaaccattaagatcatcaagtaaatctgtctatggtggaacatatggagcaagtga 29833384  T
Q  160 tccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    ||||||||| |||||||||  || ||||||||||||| |||| |||||||||||| | | | ||||||||||||| || ||||||    
T  29833383 tccatattataatttgtccttacttctgacgtgtcatcacttaaaatctgattggttcattcaaacgacttcaccaaagaagtca 29833299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 244
Target Start/End: Original strand, 33216657 - 33216848
Alignment:
Q  53 aaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaaa 152  Q
    |||||| ||| ||||| | |||||||  ||| ||||||| |||||||||||||||| |||||||| |||| ||||  |||||||||||||||||||| |     
T  33216657 aaaaattatgcgtagatgctgtaccataataccatagaggccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 33216756  T
Q  153 caagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    |||||||||||||||| ||||||||   || |  |||||||||| |||| |||||||||||||| | | |||||||||||||||| ||||||    
T  33216757 caagtgatccatattataatttgtcattacttaggacgtgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaagaagtca 33216848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 39833230 - 39833307
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| |||||||||    
T  39833230 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 39833307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 53282237 - 53282176
Alignment:
Q  183 atctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    |||||||||||||| ||||||||||||||||||  | | |||||||||||||||| ||||||    
T  53282237 atctgacgtgtcatcacttgaaatctgattggcccattcaaacgacttcaccgaagaagtca 53282176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 5233050 - 5232946
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    ||||| |||| |||||||||| |  | ||||||| ||||||||||| | |||||||| |||||||| ||| |||  |||||||||  |||||||| ||||    
T  5233050 ataaaaaggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaa 5232951  T
Q  123 ataaa 127  Q
    |||||    
T  5232950 ataaa 5232946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 36950291 - 36950351
Alignment:
Q  183 atctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtc 243  Q
    |||||||||||||| ||||||||||| ||||||  | | ||||||||||||||||||||||    
T  36950291 atctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcaccgaaaaagtc 36950351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 29703541 - 29703612
Alignment:
Q  56 aatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    |||||||||||||  || |||||| ||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  29703541 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 29703612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 36950163 - 36950234
Alignment:
Q  56 aatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    |||||||||||||   | |||||| ||||||||||||||||  |||||||||| |||||||| |||||||||    
T  36950163 aatcatgtgtagacaatataccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 36950234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 29703673 - 29703730
Alignment:
Q  187 gacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    |||||||||| |||||||||||||||||   | | |||||||||||||||||||||||    
T  29703673 gacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtca 29703730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 20104265 - 20104205
Alignment:
Q  184 tctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    ||||||||||||| |||| |||||||||||||  | | |||||| ||||||||||||||||    
T  20104265 tctgacgtgtcatcacttaaaatctgattggcctattcaaacgatttcaccgaaaaagtca 20104205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 53282365 - 53282294
Alignment:
Q  56 aatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    |||||||||||||  || |||||| ||||||||||||| ||  |||||||||| |||||||  |||||||||    
T  53282365 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagataatgaaataaa 53282294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 5232889 - 5232829
Alignment:
Q  184 tctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    ||||||||||||| |||| |||||||||||||  | | | |||||||||||||| ||||||    
T  5232889 tctgacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtca 5232829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 14096515 - 14096276
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||     
T  14096515 gagatgaatgagtgataaagaggaaatagaattggaaaaataagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacg 14096416  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14096415 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgtcttgaaatct 14096316  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattc 248  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14096315 gattggctgaattaaacgacttcaccgaaaaagtcaattc 14096276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 18977083 - 18977200
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||| | ||||||||| |||||||||| ||||||||||||| ||  ||||||||| ||||||||| ||||    
T  18977083 ataaagaggagagataattggtactagaagaaaagttatgtgtagatggtgtaccacaataacatagagactaagtaaatctaactgttaagatcatgaa 18977182  T
Q  123 ataaacttgtctatggtg 140  Q
    ||||||||||| ||||||    
T  18977183 ataaacttgtccatggtg 18977200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 14810087 - 14810191
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||| |||||||||| |||| ||| ||||    
T  14810087 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaaataaatctaaccattaaaatcatgaa 14810186  T
Q  123 ataaa 127  Q
    |||||    
T  14810187 ataaa 14810191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 15330839 - 15330735
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| ||||    
T  15330839 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 15330740  T
Q  123 ataaa 127  Q
    |||||    
T  15330739 ataaa 15330735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 37261669 - 37261773
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| ||||    
T  37261669 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 37261768  T
Q  123 ataaa 127  Q
    |||||    
T  37261769 ataaa 37261773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 16429968 - 16429864
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||  |||||||||||| |||  |||||||||| |||| ||| ||||    
T  16429968 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccataataacatagagatcaagtaaatctaaccattaaaatcatgaa 16429869  T
Q  123 ataaa 127  Q
    |||||    
T  16429868 ataaa 16429864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 17690708 - 17690604
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| | ||    
T  17690708 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaa 17690609  T
Q  123 ataaa 127  Q
    |||||    
T  17690608 ataaa 17690604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 18977203 - 18977279
Alignment:
Q  168 agaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    |||||||| | | |||| ||||||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||    
T  18977203 agaatttgcctctacatgtgacgtgtcatcacttaaaatctgattggctgaattaaacgacttcatcgaagaagtca 18977279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 37079051 - 37078947
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    ||||| |||| |||||||||| |  | ||||||| ||||||||||| | |||||||| |||||||| ||| |||  |||||||||  |||||||| ||||    
T  37079051 ataaaaaggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaa 37078952  T
Q  123 ataaa 127  Q
    |||||    
T  37078951 ataaa 37078947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 7089168 - 7089108
Alignment:
Q  183 atctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtc 243  Q
    |||||||||||||| ||||||||||| ||||||  | | ||||||||||| ||||||||||    
T  7089168 atctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcatcgaaaaagtc 7089108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 33755203 - 33755263
Alignment:
Q  183 atctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtc 243  Q
    |||||||||||||| ||||||||||| |||| |  | | ||||||||||||||||||||||    
T  33755203 atctgacgtgtcatcacttgaaatctaattgacccattcaaacgacttcaccgaaaaagtc 33755263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 7089278 - 7089225
Alignment:
Q  74 taccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    |||||| |||||||||||| |||  |||||||||| |||||||| |||||||||    
T  7089278 taccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaa 7089225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 37078890 - 37078830
Alignment:
Q  184 tctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    ||||||||||||| |||| |||||||||||||  | | | |||||||||||||| ||||||    
T  37078890 tctgacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtca 37078830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 19436931 - 19436692
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||     
T  19436931 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtatagggtgtaccacaataacatagagaccaaacaaatctaact 19436832  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  19436831 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatatgacgtatcatggcttgaaatct 19436732  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattc 248  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  19436731 gattggctgaattaaacgacttcaccgaaaaagtctattc 19436692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 29833903 - 29834142
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||||||     
T  29833903 gagatgaatgagtgataaagaggaaagagaattggaaaaataagtaaaatcatgtgcagagggtttaccacaataacatagagaccaaacaaatctaact 29834002  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  29834003 gttaagatcttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattagagtttgtcccaacatctgacatgtcatggcttgaaatct 29834102  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaattc 248  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  29834103 gattggctgaattaaacgactttaccaaaaaagtcaattc 29834142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 29258556 - 29258440
Alignment:
Q  99 aaatctaaccgttaa-gatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatg 197  Q
    ||||||||||||||| |||  ||||||||||||||| | ||||||||| ||| | |||||||||||| ||||||||||| |||  ||||||||||||||     
T  29258556 aaatctaaccgttaaagattatgaaataaacttgtccacggtggaacacatggagcaagtgatccatgttagaatttgt-ccattatctgacgtgtcatc 29258458  T
Q  198 acttgaaatctgattggc 215  Q
    ||||||||||||||||||    
T  29258457 acttgaaatctgattggc 29258440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 45972527 - 45972423
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| ||||    
T  45972527 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 45972428  T
Q  123 ataaa 127  Q
    |||||    
T  45972427 ataaa 45972423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 6442703 - 6442636
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatc 117  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||||  ||||||||| |||||||||    
T  6442703 aagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaacagttaagatc 6442636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 34094184 - 34094118
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagat 116  Q
    ||||||||||||||||||| ||| |||||| |||||||||||| |||  ||||||||||||||||||    
T  34094184 aagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagat 34094118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 29243455 - 29243380
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    ||||||||||||||||||| |||||||||| |||  ||||||| |||  |||||||||| |||||||| |||||||||    
T  29243455 aagaaaaatcatgtgtagatggtgtaccacaata--atagagatcaagtaaatctaaccattaagatcatgaaataaa 29243380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 47328046 - 47327942
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    ||||| |||| |||||||||| |  | ||||||| ||||||||||| | |||||||| |||||||| ||| |||  |||||||||  |||||||| ||||    
T  47328046 ataaaaaggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaa 47327947  T
Q  123 ataaa 127  Q
    |||||    
T  47327946 ataaa 47327942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 27286422 - 27286184
Alignment:
Q  10 agatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27286422 agatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccg 27286323  T
Q  110 ttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctg 209  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| || || |||||||||||||||||||||| |||||||||||    
T  27286322 ttaagattttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattaaaaattttcccaacatctgacgtgtcatggcttgaaatctg 27286223  T
Q  210 attggctgaattaaacgacttcaccgaaaaagtcaattc 248  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27286222 attggctgaattaaacgacttcaccgaaaaagtcaattc 27286184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 52385772 - 52386010
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  52385772 gagatgaatgggtgataaagaggaaagagaattggaaaagtaagaaaaatcatgtgtagagggtgtaccacaataacatagagatcaaacaaatctaacc 52385871  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||    
T  52385872 gtaaagatcttgaaataaacttgtctatggtggaacatatgaaacacgtgatccattttagaatttgtcccaacatatgatgtgtcatggcttgaaatct 52385971  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaatt 247  Q
    |||||||||||||||||||||||||||||||||||||||    
T  52385972 gattggctgaattaaacgacttcaccgaaaaagtcaatt 52386010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 50 - 213
Target Start/End: Complemental strand, 39241773 - 39241614
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatg 149  Q
    ||||||||||||||||||| |||||||||| |||||| |||   ||   ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39241773 aagaaaaatcatgtgtagatggtgtaccacaataacaaaga---caggtaaatctaaccgttaagatcatgaaataaacttgtctatggtggaacatatg 39241677  T
Q  150 aaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattg 213  Q
    || |||||||| |||||||||||||||| ||||||||||||||| || |||| |||||||||||    
T  39241676 aagcaagtgat-catattagaatttgtctcaacatctgacgtgttatcacttaaaatctgattg 39241614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 12981625 - 12981521
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| ||||    
T  12981625 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 12981526  T
Q  123 ataaa 127  Q
    |||||    
T  12981525 ataaa 12981521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 45348240 - 45348344
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| ||||    
T  45348240 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaa 45348339  T
Q  123 ataaa 127  Q
    |||||    
T  45348340 ataaa 45348344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 45325635 - 45325701
Alignment:
Q  51 agaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatc 117  Q
    |||||||||||||||||| ||| |||||| ||||||||||||| ||  |||||||||||||||||||    
T  45325635 agaaaaatcatgtgtagatggtataccacaataacatagagactaattaaatctaaccgttaagatc 45325701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 30625123 - 30624885
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30625123 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 30625024  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  30625023 gttaaaattttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttatcccaacatctgacgtgtcatgacttgaaatct 30624924  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaatt 247  Q
    |||||| ||||||||||||||||||  ||||||||||||    
T  30624923 gattggttgaattaaacgacttcactaaaaaagtcaatt 30624885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 41413401 - 41413636
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||| |||||||||||| |||||||||| |||||  ||| ||||||    
T  41413401 gagatgcatgagtgataaagaggaaagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 41413500  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  41413501 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatct 41413600  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    ||||||   | | |||||||||||||||| ||||||    
T  41413601 gattggtccattcaaacgacttcaccgaagaagtca 41413636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 1828671 - 1828436
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||| ||||||||||||||||| ||||| ||||||  ||||||||||||||||||| |||||||||||| |||||||||| |||||  ||| ||||||    
T  1828671 gagatgcatgagtgataaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 1828572  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||||||  |||||||||||||||||| ||||||||||    
T  1828571 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcataacatctgacgtgtcatggcttgaaatct 1828472  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    ||||||   | | |||||||||||||||| ||||||    
T  1828471 gattggtccattcaaacgacttcaccgaagaagtca 1828436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 40314136 - 40313901
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    |||||| ||||||||||||||||| ||||| ||||||  ||||||||||||||||||| |||||||||||| |||||||||| |||||  ||| ||||||    
T  40314136 gagatgcatgagtgataaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 40314037  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||  ||||||||| |||||||||||||||||| ||||||||||    
T  40314036 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattgtaatttgtcctaacatctgacgtgtcatggcttgaaatct 40313937  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    ||||||   | | |||||||||||||||| ||||||    
T  40313936 gattggtccattcaaacgacttcaccgaagaagtca 40313901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 53 - 244
Target Start/End: Original strand, 31482071 - 31482262
Alignment:
Q  53 aaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaaa 152  Q
    |||||| ||||||||| |||||||||  ||| |||||||||||||||||||||||| |||||||| |||| ||||  |||||||||||||||||||| |     
T  31482071 aaaaattatgtgtagatggtgtaccataataccatagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 31482170  T
Q  153 caagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    |||||||||||||||| |||||||||  || ||||| ||||||| |||| |||| ||||||||| | | ||||||||| |||||| ||||||    
T  31482171 caagtgatccatattataatttgtccttacttctgaagtgtcatcacttaaaatttgattggctcattcaaacgactttaccgaagaagtca 31482262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 24788296 - 24788400
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| | ||    
T  24788296 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaa 24788395  T
Q  123 ataaa 127  Q
    |||||    
T  24788396 ataaa 24788400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 39884639 - 39884578
Alignment:
Q  183 atctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    |||||||||||||| |||||||||||||||||   | | |||||||||||||||||||||||    
T  39884639 atctgacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtca 39884578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 39884763 - 39884696
Alignment:
Q  60 atgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    |||||||||  || |||||| ||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  39884763 atgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 39884696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 12938901 - 12938663
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12938901 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaacc 12938802  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  ||| ||||||    
T  12938801 gttaagattttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattaaaatttgtcccaacatctgacgtgtcatcgcttaaaatct 12938702  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaatt 247  Q
    |||||| ||||||||||||||||||  ||||||||||||    
T  12938701 gattggttgaattaaacgacttcactaaaaaagtcaatt 12938663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 33695039 - 33694802
Alignment:
Q  9 gagatgaatgagtgataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaacc 108  Q
    ||||||||||||||||||||| || |||||| |||||  |||||||||||||| ||||||||||||||||| |||| |||||| ||||| |||||||||     
T  33695039 gagatgaatgagtgataaagaagagagagaaatggaattataagaaaaatcatatgtagagggtgtaccacaataatatagaggccaaataaatctaact 33694940  T
Q  109 gttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatct 208  Q
    ||||||||| ||||||||| ||||||||| ||||||||||| | |||||||||||||||| ||||| | |||  |||| ||||||||| |||| ||||||    
T  33694939 gttaagatcatgaaataaatttgtctatgatggaacatatggagcaagtgatccatattaaaattt-ttccattatctaacgtgtcatcacttaaaatct 33694841  T
Q  209 gattggctgaattaaacgacttcaccgaaaaagtcaatt 247  Q
    ||||||   | | ||||||||||||||||||||||||||    
T  33694840 gattggtccattcaaacgacttcaccgaaaaagtcaatt 33694802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 28138039 - 28138217
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatg 149  Q
    ||||||||||||||||||| |  ||||||| |||| |||||||||||  |||||||||| |||||||| ||||||||||||||| ||| ||| |||||||    
T  28138039 aagaaaaatcatgtgtagatgacgtaccacaataatatagagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatgatgggacatatg 28138138  T
Q  150 aaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaattaaacgact 229  Q
     | |||||| ||||||||| ||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28138139 gagcaagtggtccatattaaaatttgt-cctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 28138217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 12466481 - 12466425
Alignment:
Q  187 gacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtc 243  Q
    ||||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||    
T  12466481 gacgtgttatgacttgaaatttgattggttgaattaaacgactgcaccgaaaaagtc 12466425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 14532051 - 14532131
Alignment:
Q  93 ccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaaacaagtgatccatattagaatt 173  Q
    |||||||||||||||| |||||||| |||| ||||| |||| |||||| |||||||  | |||||  | ||||||||||||    
T  14532051 ccaaacaaatctaaccattaagatcgtgaagtaaacctgtccatggtgaaacatatagagcaagttgttcatattagaatt 14532131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 53 - 244
Target Start/End: Original strand, 13802682 - 13802873
Alignment:
Q  53 aaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaaa 152  Q
    |||||| ||||||||| |||||||||  |||  ||||||||||||||||||||||| |||||||| | || ||||  |||||||||||||||||||| |     
T  13802682 aaaaattatgtgtagatggtgtaccataatacgatagagaccaaacaaatctaaccattaagatcatcaagtaaatctgtctatggtggaacatatggag 13802781  T
Q  153 caagtgatccatattagaatttgtcccaacatctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 244  Q
    |||||||||||||||| |||||||||  || ||||||||||||| |||| |||||||||||| | | | ||||||||| |||||||||||||    
T  13802782 caagtgatccatattataatttgtccttacttctgacgtgtcatcacttaaaatctgattggttcattcaaacgactttaccgaaaaagtca 13802873  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 177
Target Start/End: Complemental strand, 23613699 - 23613574
Alignment:
Q  53 aaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatctt-gaaataaacttgtctatggtggaacatatgaa 151  Q
    |||||||||||||||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||  ||| ||| || || ||||||||||||||  |    
T  23613699 aaaaatcatgtgtagaggctgtaccacaatatcatggagaccaaacaaatctaaccgttaagatcttaaaaaaaaagttatccatggtggaacatattga 23613600  T
Q  152 acaagtgatccatattagaatttgtc 177  Q
     |||||| ||||||||||||||||||    
T  23613599 gcaagtggtccatattagaatttgtc 23613574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 23614338 - 23614215
Alignment:
Q  53 aaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatctt--gaaataaacttgtctatggtggaacatatga 150  Q
    |||||||||||||||||||||| |||| |||  || |||||||||||||||||||||||||||||||   ||| ||| ||||| || ||| |||||||      
T  23614338 aaaaatcatgtgtagagggtgtgccacaatattatggagaccaaacaaatctaaccgttaagatcttaaaaaaaaaagttgtccatagtgaaacatattg 23614239  T
Q  151 aacaagtgatccatattagaattt 174  Q
    | |||||| || ||||||||||||    
T  23614238 atcaagtggtctatattagaattt 23614215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 531788 - 531684
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||  ||||    
T  531788 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaattatgaa 531689  T
Q  123 ataaa 127  Q
    |||||    
T  531688 ataaa 531684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 3879600 - 3879660
Alignment:
Q  183 atctgacgtgtcatgacttgaaatctgattggctgaattaaacgacttcaccgaaaaagtc 243  Q
    |||||||||||||| ||||||||||| ||||||| | | ||||||||||||||||||||||    
T  3879600 atctgacgtgtcatcacttgaaatctaattggctcattcaaacgacttcaccgaaaaagtc 3879660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 30945452 - 30945527
Alignment:
Q  50 aagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    ||||||||||||||||||| |||||||||| |||  ||||||| |||  |||||||||| |||||||| |||||||||    
T  30945452 aagaaaaatcatgtgtagatggtgtaccacaata--atagagatcaagtaaatctaaccattaagatcatgaaataaa 30945527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 3879472 - 3879543
Alignment:
Q  56 aatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 127  Q
    |||||||||||||   | |||||| ||||||||||||||||  |||||||||| |||||||| |||||||||    
T  3879472 aatcatgtgtagacaatataccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 3879543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 30679 - 30783
Alignment:
Q  23 ataaagaggaaagagaattggaaaaataagaaaaatcatgtgtagagggtgtaccacgataacatagagaccaaacaaatctaaccgttaagatcttgaa 122  Q
    |||||||||| ||| |||||| |  | ||||||||||||||||||| |||||||||| |||||||||||| |||  |||||||||| |||| ||| | ||    
T  30679 ataaagaggagagaaaattggtactagaagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaa 30778  T
Q  123 ataaa 127  Q
    |||||    
T  30779 ataaa 30783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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