View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0773_low_6 (Length: 387)
Name: NF0773_low_6
Description: NF0773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0773_low_6 |
 | |
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| [»] chr3 (6 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 53285555 - 53285169
Alignment:
| Q |
1 |
tcatcagtacagcaggaccatcactctctatctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53285555 |
tcatcagtacagcaggaccaccactctctatctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttc |
53285456 |
T |
|
| Q |
101 |
aaatgatagtttgacgtaaatttcaagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53285455 |
aaatgatagtttgacgtaaatttcaagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttaca |
53285356 |
T |
|
| Q |
201 |
aacttacaaacataacgaagaaattttatagatacctgcaccaatgcatcactcaggcgctcagccaaggtccataaatcatcactaaatatgatccttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53285355 |
aacttacaaacataacgaagaaattttatagatacctgcaccaatgcatcactcaggcgctcagccaaggtccataaatcatcactaaatatgatccttc |
53285256 |
T |
|
| Q |
301 |
tcatgattgaaaaagtcttccgtttatgagatttaaggagaccatcctgttgagccatctgattgaatgatggatatttttctgctt |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53285255 |
tcatgattgaaaaagtcttccgtttatgagatttaaggagaccatcctgttgagccatctgattgaatgatggatatttttctgctt |
53285169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 54139315 - 54138947
Alignment:
| Q |
1 |
tcatcagtacagcaggaccatcactctctatctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttc |
100 |
Q |
| |
|
|||||| ||||||||||||| || ||||| |||||||||||||||||||||||||||||||| || || ||||| ||| || ||||||| || ||||| |
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|
| T |
54139315 |
tcatcattacagcaggaccaccattctctgtctcatctaaaataagtttcaaacatggatcttggttgaagtgtgccgtttcctgtttacgctt-ccttc |
54139217 |
T |
|
| Q |
101 |
a-aatgatagtttgacgtaaatttcaagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttac |
199 |
Q |
| |
|
|||||| | ||| | ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
54139216 |
ttaatgatggattggcataaatttcaagcatggaagacattgatgggtcctgtgatagacat---------tctaatcaaacaaccagcagatgagttac |
54139126 |
T |
|
| Q |
200 |
aaacttacaaacataacgaagaaattttatagatacctgcaccaatgcatcactcaggcgctcagccaaggtccataaatcatcactaaatatgatcctt |
299 |
Q |
| |
|
|||| ||||||||||||||||| ||||| ||||| |||||||| ||||||||| ||||||||||||||||||||| || || |||||| | | |
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|
| T |
54139125 |
aaac--------ataacgaagaaatttta-agatagctgcatcaatgcatgactcaggcgatcagccaaggtccataaatcaacattatctatgattcgt |
54139035 |
T |
|
| Q |
300 |
ctcatgattgaaaaagtcttccgtttatgagatttaaggagaccatcctgttgagccatctgattgaatgatggatatttttctgctt |
387 |
Q |
| |
|
||||| ||||| | |||||| | |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
54139034 |
gtcatggctgaaagatacttccgatcatgagatttagggagaccatcctgtccagccatctgattgaatgatggatatttttctgctt |
54138947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 52808724 - 52808978
Alignment:
| Q |
1 |
tcatcagtacagcaggaccatcactctctatctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttc |
100 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||||||||| ||||||||||||||||||||| | | | ||||| ||| | ||||||| | ||||| |
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|
| T |
52808724 |
tcatcattacagcaggaccaccattctctatctcatctaatataagtttcaaacatggatctttttgtatgtgtgccattctctgtttacgctggccttt |
52808823 |
T |
|
| Q |
101 |
aaatgatagtttgacgtaaatttcaagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttaca |
200 |
Q |
| |
|
| ||| | ||||| |||||||| ||| |||||||||||||||||||||| | ||||| || ||||||||||||| ||||||||| ||||| |||||| |
|
|
| T |
52808824 |
atttgacggattgacaaaaatttcaggcacggaagacgttgatgggtcctgtgacagacaacagatacattctaatctaacaaccagtagatgtgttaca |
52808923 |
T |
|
| Q |
201 |
aacttacaaacataacgaagaaattttatagatacctgcaccaatgcatcactcaggcgctc |
262 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
52808924 |
-------aaacataatgaagaaattttataaatacctgcatcaatacatcactcaggcgctc |
52808978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 121 - 272
Target Start/End: Complemental strand, 1923645 - 1923500
Alignment:
| Q |
121 |
tttcaagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttacaaacttacaaacataacgaag |
220 |
Q |
| |
|
||||||||||||||||| | |||||||||||| ||||||| |||||||||||| ||| ||||| ||| |||| || | |||||||||| ||| |
|
|
| T |
1923645 |
tttcaagcatggaagacatcgatgggtcctgtgatagacagcatatacattcttatctaacaatcagtagatttgt------gtaacaaacataataaag |
1923552 |
T |
|
| Q |
221 |
aaattttatagatacctgcaccaatgcatcactcaggcgctcagccaaggtc |
272 |
Q |
| |
|
|||||||||| ||||||||| |||||||| || ||||||||| |||| |||| |
|
|
| T |
1923551 |
aaattttataaatacctgcatcaatgcattacccaggcgctcggccatggtc |
1923500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1923765 - 1923704
Alignment:
| Q |
1 |
tcatcagtacagcaggaccatcactctctatctcatctaaaataagtttcaaacatggatct |
62 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
1923765 |
tcatcattacagcaggaccgccattctctatctcatctaaaatatgtttcaaagatggatct |
1923704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 52809093 - 52809129
Alignment:
| Q |
347 |
ctgttgagccatctgattgaatgatggatatttttct |
383 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
52809093 |
ctgttcagctatctgattgaatgatggatatttttct |
52809129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 11844205 - 11844591
Alignment:
| Q |
1 |
tcatcagtacagcaggaccatcactctctatctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttc |
100 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||||| |
|
|
| T |
11844205 |
tcatcagtacagcaggaccaccaatctctatctcatctaaaataagtttcaaacatggatctctgtcaacttgtgctattcccagtttacgaaagccttc |
11844304 |
T |
|
| Q |
101 |
aaatgatagtttgacgtaaatttcaagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11844305 |
aaatgatagtttgacgtaaatttcaagcatggaagacgttgatgggtcctgtaatagacatcatatacattctaatcaaacaaccagcagatgagttaca |
11844404 |
T |
|
| Q |
201 |
aacttacaaacataacgaagaaattttatagatacctgcaccaatgcatcactcaggcgctcagccaaggtccataaatcatcactaaatatgatccttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| | |
|
|
| T |
11844405 |
aacttacaaacataacgaagaaattttatagatacctgcaccaatgcatcactcaggcgctcagccaaggtccataaatcaaaactaaaaatgatcctac |
11844504 |
T |
|
| Q |
301 |
tcatgattgaaaaagtcttccgtttatgagatttaaggagaccatcctgttgagccatctgattgaatgatggatatttttctgctt |
387 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11844505 |
tcatgattgaaaaagtcttcagtttatgagatttaaggagaccatcctgttgagccatctgattgaatgatggatatttttctgctt |
11844591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 23707066 - 23706864
Alignment:
| Q |
1 |
tcatcagtacagcaggaccatcactctctatctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttc |
100 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||| | ||||| |||| |||||||| | |||||| |
|
|
| T |
23707066 |
tcatcattacagcaggaccaccattctctatctcatctaaaataagtttcaaacatggatctttgttcaagtgtgccgttctacgtttacgctggccttc |
23706967 |
T |
|
| Q |
101 |
aaatgatagtttgacgtaaatttcaagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttaca |
200 |
Q |
| |
|
|| || | | | |||||||| | |||||||||| ||| ||||||||| ||||||| || || |||| ||||| ||||||||||||||| |||||| |
|
|
| T |
23706966 |
aagggacggatcggtataaatttccaccatggaagacaatgaagggtcctgtgatagacagcacatgcattttaatctaacaaccagcagatgtgttaca |
23706867 |
T |
|
| Q |
201 |
aac |
203 |
Q |
| |
|
||| |
|
|
| T |
23706866 |
aac |
23706864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 23619904 - 23620123
Alignment:
| Q |
13 |
caggaccatcactctctatctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttcaaatgatagttt |
112 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||| ||||| ||| | ||||| |||| |||||||| | |||||||| ||| | | |
|
|
| T |
23619904 |
caggaccaccattctctatctcatctaaaataagtttcaaacattgatctttgttcaagtgtgccgttctacgtttacgctggccttcaagtgacggatc |
23620003 |
T |
|
| Q |
113 |
gacgtaaatttcaagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttacaaacttacaaaca |
212 |
Q |
| |
|
| |||||||| | |||||||||| |||||||||||||| ||||||| || || |||| ||||| ||||||||||||| | ||||| ||||| |
|
|
| T |
23620004 |
ggtataaatttccaccatggaagacattgatgggtcctgtgatagacagcacatgcattttaatctaacaaccagcagaagtgttac--------aaaca |
23620095 |
T |
|
| Q |
213 |
taacgaagaaattttatagatacctgca |
240 |
Q |
| |
|
|||||||||||||||| | ||||||||| |
|
|
| T |
23620096 |
taacgaagaaattttaaaaatacctgca |
23620123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 23736683 - 23736902
Alignment:
| Q |
13 |
caggaccatcactctctatctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttcaaatgatagttt |
112 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||| ||||| ||| | ||||| |||| |||||||| | |||||||| ||| | | |
|
|
| T |
23736683 |
caggaccaccattctctatctcatctaaaataagtttcaaacattgatctttgttcaagtgtgccgttctacgtttacgctggccttcaagtgacggatc |
23736782 |
T |
|
| Q |
113 |
gacgtaaatttcaagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttacaaacttacaaaca |
212 |
Q |
| |
|
| |||||||| | |||||||||| |||||||||||||| ||||||| || || |||| ||||| ||||||||||||| | ||||| ||||| |
|
|
| T |
23736783 |
ggtataaatttccaccatggaagacattgatgggtcctgtgatagacagcacatgcattttaatctaacaaccagcagaagtgttac--------aaaca |
23736874 |
T |
|
| Q |
213 |
taacgaagaaattttatagatacctgca |
240 |
Q |
| |
|
|||||||||||||||| | ||||||||| |
|
|
| T |
23736875 |
taacgaagaaattttaaaaatacctgca |
23736902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 23651249 - 23651468
Alignment:
| Q |
13 |
caggaccatcactctctatctcatctaaaataagtttcaaacatggatctctgtcgacttgtgctgttccccgtttacgtttgccttcaaatgatagttt |
112 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||| ||||| ||| | ||||| |||| |||||||| | ||||||| ||| | | |
|
|
| T |
23651249 |
caggaccaccattctctatctcatctaaaataagtttcaaacattgatctttgttcaagtgtgccgttctacgtttacgctgaccttcaagtgacggatc |
23651348 |
T |
|
| Q |
113 |
gacgtaaatttcaagcatggaagacgttgatgggtcctgtcatagacatcatatacattctaatcaaacaaccagcagatgagttacaaacttacaaaca |
212 |
Q |
| |
|
| |||||||| | |||||||||| |||||||||||||| ||||||| || || |||| ||||| ||||||||||||| | ||||| ||||| |
|
|
| T |
23651349 |
ggtataaatttccaccatggaagacattgatgggtcctgtgatagacagcacatgcattttaatctaacaaccagcagaagtgttac--------aaaca |
23651440 |
T |
|
| Q |
213 |
taacgaagaaattttatagatacctgca |
240 |
Q |
| |
|
|||||||||||||||| | ||||||||| |
|
|
| T |
23651441 |
taacgaagaaattttaaaaatacctgca |
23651468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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