View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0773_low_7 (Length: 383)
Name: NF0773_low_7
Description: NF0773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0773_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 6852245 - 6852079
Alignment:
| Q |
1 |
aacatcatactctataacaaagagtattccacaaagattcttagctgagatcttctgattaaggtcaatgttccactagtgtgctagtcattggcttacc |
100 |
Q |
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| T |
6852245 |
aacatcatactctataacaaagagtattctacaaagattcttagcttagatcttctgattaaggtcaatgttccactagtgtgctagtcattggcttacc |
6852146 |
T |
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| Q |
101 |
aataacagaactctatgtaccgttatatcagtacttataaaatgaatttgaaactttatttggacag |
167 |
Q |
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| T |
6852145 |
aataacagaactctatataccgttatatcagtacttataaaatgaatttgaaactttatttggacag |
6852079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 174 - 354
Target Start/End: Complemental strand, 6885202 - 6885016
Alignment:
| Q |
174 |
acaagatgaaccagttttttaatgtctaagcaactaacctaagatgcttagggtccaaaatgtggtttgataaacaaaattttgatttttaactttagag |
273 |
Q |
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| T |
6885202 |
acaacatgaaccagtttttgaatgtctaatcaactaacctaagatgcttaaggtccaaaatgtgaattgacaaacaaaattttgctttataacttaagag |
6885103 |
T |
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| Q |
274 |
attgttaactac------ttatcctctttgaaactcgcttggttaatcatgaggtggatttgcttatagaaagaggcagacagaaag |
354 |
Q |
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| T |
6885102 |
attgttaactactattagttatcctctttgaaacacgcttggtttatcatgaggtggatttgcttatagaaagaggaagacagaaag |
6885016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 163 - 354
Target Start/End: Complemental strand, 6850518 - 6850342
Alignment:
| Q |
163 |
gacaggtatgcacaagatgaaccagttttttaatgtctaagcaactaacctaagatgcttagggtccaaaatgtggtttgataaacaaaattttgatttt |
262 |
Q |
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| T |
6850518 |
gacaggtatgcacaagatgaaccagtttttgaatgtctaagcaactaacctaa----------------aatgtggtttgataaacaa--ttttgatttt |
6850437 |
T |
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| Q |
263 |
taactttagagattgttaactact---tatcctctttgaaactcgcttggttaatcatgaggtggatttgcttatagaaagaggcagacagaaag |
354 |
Q |
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| T |
6850436 |
taactttagagattgttaactactacttatcctctttgaaactcgcttggttaatcatgaggtggatttgcttatagaaagaggcaaacagaaag |
6850342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 205 - 353
Target Start/End: Complemental strand, 6890931 - 6890785
Alignment:
| Q |
205 |
aactaacctaagatgcttagggtccaaaatgtggtttgataaacaaaattttgatttttaactttagagattgttaac---tacttatcctctttgaaac |
301 |
Q |
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| T |
6890931 |
aactaacctaagatgcttacggtccaaaatgtggtttgataaacaaaacgttattttataa-----gagattgttaactactacttatcctctttgaaac |
6890837 |
T |
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| Q |
302 |
tcgcttggttaatcatgaggtggatttgcttatagaaagaggcagacagaaa |
353 |
Q |
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| T |
6890836 |
ttgcttggtttttcatgaggtggatttgcttatagaaagaggtagacagaaa |
6890785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 6885400 - 6885270
Alignment:
| Q |
4 |
atcatactctataacaaagagtattccacaaagattcttagctgagatcttctgattaaggtcaatgttccactagtgtgctagtcattggcttaccaat |
103 |
Q |
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| T |
6885400 |
atcatactctttgacaaagagtattccactaagattcttaacttagatgttctgattaaggtcaatgtttccctagtgtgcttgtcattggcttatcaat |
6885301 |
T |
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| Q |
104 |
aacagaactctatgtaccgttatatcagtac |
134 |
Q |
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| T |
6885300 |
aacaaaactctagatactgttaaatcagtac |
6885270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 174 - 352
Target Start/End: Original strand, 30596046 - 30596224
Alignment:
| Q |
174 |
acaagatgaaccagttttttaatgtctaagcaactaacctaagatgcttagggtccaaaatgtggtttgataaacaaaattttgatttttaactttagag |
273 |
Q |
| |
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|||| |||||||||||||||||||||| | |||||||||||||| |||||| |||||||||| |||||||||||||| || ||| | ||||||||| |
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| T |
30596046 |
acaacatgaaccagttttttaatgtctgatcaactaacctaagacgcttagagtccaaaatgaggtttgataaacaacat----attgctgactttagag |
30596141 |
T |
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| Q |
274 |
attgtta-actac---ttatcctctttgaaactcgcttggttaatcatgaggtggatttgcttatagaaagaggcagacagaa |
352 |
Q |
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| T |
30596142 |
attgtcacactactgtttaccctctttgaaactcgcttggttttttatgagctggattttcttctaaaatgaggcagacagaa |
30596224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 6891054 - 6891005
Alignment:
| Q |
56 |
tgattaaggtcaatgttccactagtgtgctagtcattggcttaccaataa |
105 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||| |||||| |
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| T |
6891054 |
tgattaaggtcaatgttccactagtgtgcttgtcatcggcttatcaataa |
6891005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 30595553 - 30595593
Alignment:
| Q |
38 |
ttcttagctgagatcttctgattaaggtcaatgttccacta |
78 |
Q |
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| T |
30595553 |
ttcttaactgagatattctaattaaggtcaatgttccacta |
30595593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 30595924 - 30595968
Alignment:
| Q |
38 |
ttcttagctgagatcttctgattaaggtcaatgttccactagtgt |
82 |
Q |
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| T |
30595924 |
ttcttaactgagatattctaattgaggtcaatgttccactagtgt |
30595968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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