View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0773_low_9 (Length: 369)
Name: NF0773_low_9
Description: NF0773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0773_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 3 - 272
Target Start/End: Complemental strand, 15595584 - 15595316
Alignment:
| Q |
3 |
ccaacttactgcctcatgataaatactggagaaatctgattccatctcttatccttgggcatgcattcgaaattaccttgattcgtgaaatgtccttcca |
102 |
Q |
| |
|
|||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15595584 |
ccaacttactacctcatgaaaaatactagagaaatctgattccatctcttatccttgggcatgcattcgaaattaccttgattcgtgaaatgtccttcca |
15595485 |
T |
|
| Q |
103 |
tcacttaaatattcattcatcctgactttcatgctccataacattccacttcctgactcataggtctgacacttaagatttgggaggtgcggtcaatctg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
15595484 |
tcacttaaatattcattcatcctgactttcatgctccataacattccacttcttgactcataggtctgacacttaagattcgggaggtgcggtcactctg |
15595385 |
T |
|
| Q |
203 |
acagagtttggctaacttatgttgcttacttagttacctcataagaagttaacttcgtatacctcccaag |
272 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15595384 |
acagagtttggctaac-tatgttgcttacttagttacctcataagaagttaacttcgtataccacccaag |
15595316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 14734728 - 14734580
Alignment:
| Q |
96 |
ccttccatcacttaaatattcattcatcctgactttcatgctccataacattccacttcctgactcataggtctgacacttaagatttgggaggtgcggt |
195 |
Q |
| |
|
|||||||| ||||||||| |||| |||||| || |||||| | || ||||| ||||| | | | ||| || |||||||||||||| |||||| ||| | |
|
|
| T |
14734728 |
ccttccattacttaaatactcatccatcctaaccttcatgttgtatgacatttcactttccgtcctataagtttgacacttaagattcgggaggcgcgat |
14734629 |
T |
|
| Q |
196 |
caatctgacagagtttggctaacttatgttgcttacttagttacctcataa |
246 |
Q |
| |
|
| ||||||||||| || |||||||| ||||||||||| ||||| ||||| |
|
|
| T |
14734628 |
c--tctgacagagtctgactaacttacattgcttacttaattaccccataa |
14734580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5611 times since January 2019
Visitors: 5758