View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0774_high_3 (Length: 393)
Name: NF0774_high_3
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0774_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 4259320 - 4258972
Alignment:
| Q |
16 |
ccaagaatatgaatgaatgaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaa |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4259320 |
ccaaaaatatgaatgaatgaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaa |
4259221 |
T |
|
| Q |
116 |
tcaaaacgagagggagttacatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4259220 |
tcaaaacgagagggagttacatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatag |
4259121 |
T |
|
| Q |
216 |
aagacaaactttgccttgataattataaagtattatactacatacaaatatgctatataattagacgaaaatgatacctttcaacttctgattcatgtac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4259120 |
aagacaaactttgccttgataattataaagtattatactacatacaaatatgctatataattagacgaaaatgatacctttcaacttctgattcatgtac |
4259021 |
T |
|
| Q |
316 |
tccttggatgatgaatagtgcgatagctgaagtctacagaatttgaacc |
364 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
4259020 |
tccttggatgacgaatagtgcgatagctgaattctacagaatttgaacc |
4258972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 4262942 - 4262594
Alignment:
| Q |
16 |
ccaagaatatgaatgaatgaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaa |
115 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262942 |
ccaaaaatatgaatgaatgaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaa |
4262843 |
T |
|
| Q |
116 |
tcaaaacgagagggagttacatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262842 |
tcaaaacgagagggagttacatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatag |
4262743 |
T |
|
| Q |
216 |
aagacaaactttgccttgataattataaagtattatactacatacaaatatgctatataattagacgaaaatgatacctttcaacttctgattcatgtac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262742 |
aagacaaactttgccttgataattataaagtattatactacatacaaatatgctatataattagacgaaaatgatacctttcaacttctgattcatgtac |
4262643 |
T |
|
| Q |
316 |
tccttggatgatgaatagtgcgatagctgaagtctacagaatttgaacc |
364 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
4262642 |
tccttggatgacgaatagtgcgatagctgaattctacagaatttgaacc |
4262594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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