View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0774_high_7 (Length: 299)
Name: NF0774_high_7
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0774_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 270
Target Start/End: Original strand, 888673 - 888931
Alignment:
| Q |
11 |
cataggatacaagaatttccaaacattttac-ttctcaggaacctcatttcacagatttactttcatatcattttgtaaacactaaagcaaattcaacgc |
109 |
Q |
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| T |
888673 |
cataggatacaagaatttccaaacattttaccttctcaggaacctcatttcacagatttacttgaat--cattttgtaaacactaaagcaaattcaacgc |
888770 |
T |
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| Q |
110 |
aaggtgagataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaactgaaa |
209 |
Q |
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| T |
888771 |
acggtgagataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaactgaaa |
888870 |
T |
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| Q |
210 |
attcaaaaaccaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgca |
270 |
Q |
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| T |
888871 |
attcaaaaaccaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgca |
888931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 913735 - 913485
Alignment:
| Q |
19 |
acaagaatttccaaacattttac-ttctcaggaacctcatttcacagatttactttcatatcattttgtaaacactaaagcaaattcaacgcaaggtgag |
117 |
Q |
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| T |
913735 |
acaagaatttccaaacattttaccttctcaggaacctcatttcacagatttacttgaat--cattttgtaaacactaaagcaaattcaacgcacggtgag |
913638 |
T |
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| Q |
118 |
ataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaactgaaaattcaaaa |
217 |
Q |
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| T |
913637 |
ataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaactgaaaattcaaaa |
913538 |
T |
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| Q |
218 |
accaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgca |
270 |
Q |
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| T |
913537 |
accaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgca |
913485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 1002697 - 1002602
Alignment:
| Q |
12 |
ataggatacaagaatttccaaacattttacttctcaggaacctcatttcacagatttactttcatatcattttgtaaacactaaagcaaattcaac |
107 |
Q |
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| T |
1002697 |
ataggatacaagaatttccaaacatttaccttctcaggatcctcatttcacagatttattttcacatcattttgcaaacactaaagcaaattcaac |
1002602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 1002496 - 1002403
Alignment:
| Q |
103 |
tcaacgcaaggtgagataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcat |
196 |
Q |
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|||| ||| |||||||| || |||||||||||| || ||||||||||| | ||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
1002496 |
tcaatgcacggtgagatgaaagcaaataacatgatcatcagattggacgcgagttactaccgttataatataagaaaccaaacaagcacttcat |
1002403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 913786 - 913739
Alignment:
| Q |
103 |
tcaacgcaaggtgagataaatgcaaataacatgttcttcagattggac |
150 |
Q |
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|||||||| |||||||||||||| ||||||||| ||||||||||||| |
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| T |
913786 |
tcaacgcacggtgagataaatgcgaataacatgaacttcagattggac |
913739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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