View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0774_low_10 (Length: 356)

Name: NF0774_low_10
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0774_low_10
NF0774_low_10
[»] chr1 (11 HSPs)
chr1 (95-356)||(41638494-41638755)
chr1 (270-343)||(6659501-6659573)
chr1 (272-341)||(25479570-25479638)
chr1 (298-351)||(48830114-48830167)
chr1 (270-342)||(23902078-23902149)
chr1 (308-351)||(42556679-42556722)
chr1 (270-351)||(10199419-10199499)
chr1 (274-351)||(15361692-15361768)
chr1 (270-342)||(6279387-6279458)
chr1 (298-342)||(25005835-25005879)
chr1 (298-354)||(44422675-44422731)
[»] chr6 (6 HSPs)
chr6 (270-342)||(281859-281930)
chr6 (272-342)||(31671087-31671156)
chr6 (277-342)||(1275137-1275201)
chr6 (298-351)||(2117382-2117435)
chr6 (273-342)||(28088236-28088304)
chr6 (274-334)||(14492298-14492357)
[»] chr8 (16 HSPs)
chr8 (270-351)||(28769350-28769430)
chr8 (244-342)||(12361180-12361273)
chr8 (270-342)||(4558786-4558857)
chr8 (270-326)||(30277256-30277311)
chr8 (270-342)||(31705073-31705144)
chr8 (308-351)||(1470904-1470947)
chr8 (270-337)||(8062322-8062388)
chr8 (299-342)||(44865603-44865646)
chr8 (301-351)||(27728062-27728112)
chr8 (305-343)||(30043791-30043829)
chr8 (298-351)||(10075589-10075642)
chr8 (270-343)||(30389086-30389158)
chr8 (270-351)||(31862472-31862552)
chr8 (298-338)||(6509341-6509381)
chr8 (270-326)||(8060673-8060728)
chr8 (299-351)||(29973060-29973112)
[»] chr2 (8 HSPs)
chr2 (298-351)||(13736331-13736384)
chr2 (269-351)||(42621385-42621466)
chr2 (270-342)||(22681196-22681267)
chr2 (308-342)||(18066116-18066150)
chr2 (308-342)||(25800817-25800851)
chr2 (309-351)||(29643465-29643507)
chr2 (299-349)||(37292386-37292436)
chr2 (298-342)||(39983330-39983374)
[»] chr4 (6 HSPs)
chr4 (270-342)||(8468936-8469007)
chr4 (274-342)||(24929481-24929548)
chr4 (270-342)||(29263358-29263429)
chr4 (270-337)||(7694021-7694087)
chr4 (275-341)||(11158373-11158438)
chr4 (308-342)||(49940039-49940073)
[»] chr3 (10 HSPs)
chr3 (275-351)||(48807687-48807762)
chr3 (270-351)||(38462260-38462340)
chr3 (275-342)||(14548737-14548803)
chr3 (307-342)||(36783381-36783416)
chr3 (275-341)||(11253491-11253555)
chr3 (275-341)||(24887299-24887364)
chr3 (308-342)||(33405215-33405249)
chr3 (270-335)||(53891904-53891968)
chr3 (302-350)||(33307494-33307542)
chr3 (313-349)||(48816507-48816543)
[»] chr7 (5 HSPs)
chr7 (298-340)||(28340882-28340924)
chr7 (270-342)||(38010702-38010773)
chr7 (298-340)||(21453284-21453326)
chr7 (270-351)||(3468593-3468673)
chr7 (298-342)||(23434196-23434240)
[»] chr5 (11 HSPs)
chr5 (270-351)||(16889714-16889794)
chr5 (270-342)||(37588371-37588442)
chr5 (308-351)||(26516379-26516422)
chr5 (216-351)||(28586726-28586857)
chr5 (298-351)||(14295485-14295538)
chr5 (308-349)||(15246814-15246855)
chr5 (275-340)||(36542298-36542362)
chr5 (310-351)||(39823171-39823212)
chr5 (308-348)||(15557295-15557335)
chr5 (249-342)||(32408586-32408674)
chr5 (270-342)||(37526210-37526281)
[»] scaffold0020 (1 HSPs)
scaffold0020 (276-340)||(159990-160053)
[»] scaffold0100 (1 HSPs)
scaffold0100 (308-342)||(42604-42638)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 95 - 356
Target Start/End: Complemental strand, 41638755 - 41638494
Alignment:
Q  95 taaaatagcaagagcatgtaagttgagatgcattaatcttcaccataaaaactatgaaagcaaaaattattttacttaaatctaatattaacaattcatt 194  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41638755 taaaatagcaagagcatgtgagttgagatgcattaatcttcaccataaaaactatgaaagcaaaaattattttacttaaatctaatattaacaattcatt 41638656  T
Q  195 tatgacatagggtatgtttgaatttgtgatactgtatgggagacctaaggaaatagcttatgacatgtcaacccgtaagttgttttcagcttatttccac 294  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41638655 tatgatatagtgtatgtttgaatttgtgatactgtatgggagacctaaggaaatagcttatgacatgtcaacccgtaagtagttttcagcttatttccac 41638556  T
Q  295 caggctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttgagatcg 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41638555 caggctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttgagatcg 41638494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 6659573 - 6659501
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaag 343  Q
    |||||||||||||||||||||| |  || |||||| |  ||||||||||||||| || ||||||||||||||||    
T  6659573 taagttgttttcagcttatttcgataag-ctctcttggttagcttatgaaaacatcttatagcttatatgaaag 6659501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 25479638 - 25479570
Alignment:
Q  272 agttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaa 341  Q
    ||||||||||||||||||| ||  || |||||||| |||||||||||||||| || ||||| ||||||||    
T  25479638 agttgttttcagcttattttcataag-ctctctaggatagcttatgaaaacaacttatagcctatatgaa 25479570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 48830114 - 48830167
Alignment:
Q  298 gctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    ||||| ||| ||||||||||||||||| | ||||||||||||||| ||||||||    
T  48830114 gctctttagaatagcttatgaaaacagtttatagcttatatgaaaatagtttga 48830167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 23902078 - 23902149
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||||||||||||||||| |||||  || |||||||  ||||||| |||||||| || |||||||||||||||    
T  23902078 taagttgttttcagcttacttccataag-ctctctaagatagcttttgaaaacaacttatagcttatatgaaa 23902149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 351
Target Start/End: Original strand, 42556679 - 42556722
Alignment:
Q  308 atagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    |||||||||||||||| || ||||||||||| ||||||||||||    
T  42556679 atagcttatgaaaacaacttatagcttatataaaagtagtttga 42556722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 10199419 - 10199499
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    ||||||||||||||||||||| ||  || |||||||  |||||||||||||| |||| || | ||||| |||| ||||||||    
T  10199419 taagttgttttcagcttattttcataag-ctctctaaaatagcttatgaaaaaagcttatcgattatacgaaaatagtttga 10199499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 15361768 - 15361692
Alignment:
Q  274 ttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    |||||||||||||| |||||  |  ||||| || ||| ||||||||||||||| ||||||||||||||| || |||||    
T  15361768 ttgttttcagcttaattccataaa-ctctcaagaatatcttatgaaaacagcttatagcttatatgaaaataatttga 15361692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 6279458 - 6279387
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    ||||||||||||||| ||||||||  || |||||||| |||||||||||||| || | | |||||||| ||||    
T  6279458 taagttgttttcagcgtatttccataag-ctctctaggatagcttatgaaaatagtttaaagcttatacgaaa 6279387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 25005835 - 25005879
Alignment:
Q  298 gctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||||| || |||||||||||||||| || |||||||||||||||    
T  25005835 gctctccaggatagcttatgaaaacaacttatagcttatatgaaa 25005879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 44422731 - 44422675
Alignment:
Q  298 gctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttgagat 354  Q
    |||||| || ||||||||| |||| |||| |||||||||||||||  ||||||||||    
T  44422731 gctctccaggatagcttataaaaatagcttatagcttatatgaaaacagtttgagat 44422675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 281859 - 281930
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    ||||||||||||||||||||||||  || |||||||| |||||||||||| |||||| |||||||||||||||    
T  281859 taagttgttttcagcttatttccatgag-ctctctaggatagcttatgaacacagcttatagcttatatgaaa 281930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 31671087 - 31671156
Alignment:
Q  272 agttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    ||||||||||||||||||| ||  || || ||||| |||| ||| |||||||||| |||||||||||||||    
T  31671087 agttgttttcagcttattttcataag-ctatctaggatagtttacgaaaacagcttatagcttatatgaaa 31671156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 1275201 - 1275137
Alignment:
Q  277 ttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||||||||||||||||  || ||||| || ||| | ||||||||||||| |||||||||||||||    
T  1275201 ttttcagcttatttccataag-ctctccaggataacatatgaaaacagcttatagcttatatgaaa 1275137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 2117435 - 2117382
Alignment:
Q  298 gctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    ||||||||| ||| |||||||||||| || |||| |||||||||| ||||||||    
T  2117435 gctctctaggataacttatgaaaacaacttatagattatatgaaaatagtttga 2117382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 28088236 - 28088304
Alignment:
Q  273 gttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||||||| ||||||||||||  || ||||| |  ||||||||||||||||| | |||||||||||||||    
T  28088236 gttgttttgagcttatttccatgag-ctctccatgatagcttatgaaaacagtttatagcttatatgaaa 28088304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 14492357 - 14492298
Alignment:
Q  274 ttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagctt 334  Q
    |||||||||||| |||||||| |  |||||||| ||| ||||||||||||||| |||||||    
T  14492357 ttgttttcagctgatttccacaaa-ctctctaggataacttatgaaaacagcttatagctt 14492298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 28769350 - 28769430
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    ||||||||||||||||||||||||  |  ||||| |  ||||||||||||||||||| |||||||||| |||| ||||||||    
T  28769350 taagttgttttcagcttatttccataaa-ctctccaaaatagcttatgaaaacagcttatagcttataagaaaatagtttga 28769430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 342
Target Start/End: Complemental strand, 12361273 - 12361180
Alignment:
Q  244 gaaatagcttatgacatgtcaacccgtaagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||||||||||||||||||| |    |||| |||||||| ||||||||||  || |||||  | ||| ||||||||||||||| |||||||||||||||    
T  12361273 gaaatagcttatgacatgtcca----taagctgttttcaacttatttccattag-ctctcctgaataacttatgaaaacagcttatagcttatatgaaa 12361180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 4558857 - 4558786
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    ||||||||||| || |||||||||  | ||||||||| |||||||||| |||||||| ||||| |||||||||    
T  4558857 taagttgtttttagtttatttcca-taagctctctaggatagcttatggaaacagcttatagcatatatgaaa 4558786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 30277256 - 30277311
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagct 326  Q
    ||||||||||||||||||||||||  |  |||||||| |||||||||||||||||||    
T  30277256 taagttgttttcagcttatttcca-taaactctctaggatagcttatgaaaacagct 30277311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 31705144 - 31705073
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||| |||||||||||||||||||  |  ||||| || | ||||||||||||||||| |||||||||||||||    
T  31705144 taagctgttttcagcttatttccataaa-ctctcaaggacagcttatgaaaacagcttatagcttatatgaaa 31705073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 351
Target Start/End: Original strand, 1470904 - 1470947
Alignment:
Q  308 atagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    |||| |||||||||||||| |||||||||||||||||| |||||    
T  1470904 ataggttatgaaaacagcttatagcttatatgaaagtaatttga 1470947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 337
Target Start/End: Complemental strand, 8062388 - 8062322
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttata 337  Q
    |||| |||||||||||||||||||  |  |||||||  ||||||||||||||||||| ||||||||||    
T  8062388 taagatgttttcagcttatttccataat-ctctctaagatagcttatgaaaacagcttatagcttata 8062322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 44865603 - 44865646
Alignment:
Q  299 ctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||||||||||||||||| ||| ||||| |||||||||||||||    
T  44865603 ctctctagtatagcttataaaaccagcttatagcttatatgaaa 44865646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 27728062 - 27728112
Alignment:
Q  301 ctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    |||||| |||||||||||||||| ||||||  |||||||||| ||||||||    
T  27728062 ctctaggatagcttatgaaaacaactaatactttatatgaaaatagtttga 27728112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 30043791 - 30043829
Alignment:
Q  305 agtatagcttatgaaaacagctaatagcttatatgaaag 343  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  30043791 agtatagcttatgaaaacagcttatagcatatatgaaag 30043829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 10075589 - 10075642
Alignment:
Q  298 gctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    ||||||||| |||||||||||||| |||| ||| ||||||| ||| ||||||||    
T  10075589 gctctctaggatagcttatgaaaatagcttataacttatataaaaatagtttga 10075642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 30389158 - 30389086
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaag 343  Q
    ||||||||||||||||||||| ||  ||  ||||||| | ||||||||||||||||  ||||||||||| ||||    
T  30389158 taagttgttttcagcttattttcataagt-tctctaggaaagcttatgaaaacagcgtatagcttatataaaag 30389086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 351
Target Start/End: Complemental strand, 31862552 - 31862472
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    |||| |||||||||||||||| ||  || |||||||| ||| |||||||||||| || |||||||||| || | ||||||||    
T  31862552 taagctgttttcagcttattttcataag-ctctctaggataacttatgaaaacatcttatagcttatacgagaatagtttga 31862472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 6509341 - 6509381
Alignment:
Q  298 gctctctagtatagcttatgaaaacagctaatagcttatat 338  Q
    |||||| || ||||||||||||||||||| |||||||||||    
T  6509341 gctctccaggatagcttatgaaaacagcttatagcttatat 6509381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 8060728 - 8060673
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagct 326  Q
    |||||| |||||||||||||||||  || |||||||| || ||||||||||||||||    
T  8060728 taagttattttcagcttatttccataag-ctctctaggattgcttatgaaaacagct 8060673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 29973112 - 29973060
Alignment:
Q  299 ctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    ||||| || |||||||||||||||| || ||||||||| ||||| ||||||||    
T  29973112 ctctcaaggatagcttatgaaaacaacttatagcttatgtgaaaatagtttga 29973060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 13736331 - 13736384
Alignment:
Q  298 gctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    ||||||||||||||||||||||||||||| |||||| || ||||| ||||||||    
T  13736331 gctctctagtatagcttatgaaaacagcttatagctgatgtgaaaatagtttga 13736384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 42621385 - 42621466
Alignment:
Q  269 gtaagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    |||||||||||||||||||||| ||| ||  |||| || ||| ||||||||||||||| |||||||||| || | ||||||||    
T  42621385 gtaagttgttttcagcttattttcacaagt-tctccagaataacttatgaaaacagcttatagcttataagataatagtttga 42621466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 22681196 - 22681267
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||| |||||| ||||||||||||  ||  ||||||| |||| |||||||||||||| |||||||||||||||    
T  22681196 taagctgtttttagcttatttccataagt-tctctaggatagattatgaaaacagcttatagcttatatgaaa 22681267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Complemental strand, 18066150 - 18066116
Alignment:
Q  308 atagcttatgaaaacagctaatagcttatatgaaa 342  Q
    ||||||||||||||||||| |||||||||||||||    
T  18066150 atagcttatgaaaacagcttatagcttatatgaaa 18066116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Complemental strand, 25800851 - 25800817
Alignment:
Q  308 atagcttatgaaaacagctaatagcttatatgaaa 342  Q
    ||||||||||||||||||| |||||||||||||||    
T  25800851 atagcttatgaaaacagcttatagcttatatgaaa 25800817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 29643465 - 29643507
Alignment:
Q  309 tagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    |||||||||||||||||| | |||||||||||||||| |||||    
T  29643465 tagcttatgaaaacagcttagagcttatatgaaagtaatttga 29643507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 37292386 - 37292436
Alignment:
Q  299 ctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagttt 349  Q
    ||||| || |||||||| ||||||| |||||||||||||||||| ||||||    
T  37292386 ctctccaggatagcttaagaaaacaactaatagcttatatgaaaatagttt 37292436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 39983374 - 39983330
Alignment:
Q  298 gctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||||| || |||||||||||||||| || |||||||||||||||    
T  39983374 gctctccaggatagcttatgaaaacaacttatagcttatatgaaa 39983330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 8469007 - 8468936
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||||||||||||| |||||| ||  || |||||||| ||| |||||||||||| ||||||||||||||||||    
T  8469007 taagttgttttcagattattttcataag-ctctctagaataacttatgaaaacaactaatagcttatatgaaa 8468936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 24929548 - 24929481
Alignment:
Q  274 ttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    ||||||||||||||||||||  || |||||||||| || ||||||||||| || ||||||| |||||||    
T  24929548 ttgttttcagcttatttccataag-ctctctagtagagtttatgaaaacaacttatagcttttatgaaa 24929481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 29263429 - 29263358
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||||||||||||||||||||||| || |||||  || |||||||||||||||| || || |||||| |||||    
T  29263429 taagttgttttcagcttatttcca-caagctctgcaggatagcttatgaaaacaacttatcgcttatttgaaa 29263358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 337
Target Start/End: Original strand, 7694021 - 7694087
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttata 337  Q
    ||||||||||||||||||||||||  |  ||||| || ||| ||||||||||||||| ||||||||||    
T  7694021 taagttgttttcagcttatttcca-taaactctccaggataacttatgaaaacagcttatagcttata 7694087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 11158373 - 11158438
Alignment:
Q  275 tgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaa 341  Q
    ||||||||||||||||||| || ||||||||  |||||||||||||||| || ||| ||| ||||||    
T  11158373 tgttttcagcttatttcca-caagctctctaagatagcttatgaaaacaacttataacttgtatgaa 11158438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Original strand, 49940039 - 49940073
Alignment:
Q  308 atagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||||||||||||||||||||||||||||| ||||    
T  49940039 atagcttatgaaaacagctaatagcttatacgaaa 49940073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 48807762 - 48807687
Alignment:
Q  275 tgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    |||||||||||||||| |||  |||||||||| ||| |||||||||||| || ||||||| ||||||| ||||||||    
T  48807762 tgttttcagcttattttcact-ggctctctagaataacttatgaaaacaacttatagcttctatgaaaatagtttga 48807687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 351
Target Start/End: Complemental strand, 38462340 - 38462260
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    ||||||||||||||||||||||||  || || ||| | ||||||||||||||||| | ||||| |||||||||  |||||||    
T  38462340 taagttgttttcagcttatttccataag-ctatcttggatagcttatgaaaacagtttatagcatatatgaaaacagtttga 38462260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 342
Target Start/End: Original strand, 14548737 - 14548803
Alignment:
Q  275 tgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||||||||||||||||||  || ||||| || ||| |||||||||||| || |||||||||||||||    
T  14548737 tgttttcagcttatttccataag-ctctccagaataacttatgaaaacaacttatagcttatatgaaa 14548803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 342
Target Start/End: Original strand, 36783381 - 36783416
Alignment:
Q  307 tatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    ||||||||||||||||||||||||| ||||||||||    
T  36783381 tatagcttatgaaaacagctaatagtttatatgaaa 36783416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 11253555 - 11253491
Alignment:
Q  275 tgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaa 341  Q
    |||||||||| ||||||| | | ||||||||| ||||||||||||| ||||| ||||||||||||||    
T  11253555 tgttttcagcctatttcc-ctaagctctctaggatagcttatgaaa-cagcttatagcttatatgaa 11253491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 24887299 - 24887364
Alignment:
Q  275 tgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaa 341  Q
    ||||||||||||||| |||  || ||||| || |||||||||||||||||||  |||||||||||||    
T  24887299 tgttttcagcttattcccataag-ctctccaggatagcttatgaaaacagcttttagcttatatgaa 24887364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Original strand, 33405215 - 33405249
Alignment:
Q  308 atagcttatgaaaacagctaatagcttatatgaaa 342  Q
    ||||||||||||||||||| |||||||||||||||    
T  33405215 atagcttatgaaaacagcttatagcttatatgaaa 33405249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 335
Target Start/End: Original strand, 53891904 - 53891968
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagctta 335  Q
    ||||||||||| || ||||||||| ||| | |||||| ||||||||||||| ||||| ||||||||    
T  53891904 taagttgttttaagtttatttccaacag-cactctaggatagcttatgaaatcagcttatagctta 53891968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 33307494 - 33307542
Alignment:
Q  302 tctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttg 350  Q
    |||||||||||||||||||||| || ||| ||||||| ||| |||||||    
T  33307494 tctagtatagcttatgaaaacatcttataacttatataaaaatagtttg 33307542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 48816507 - 48816543
Alignment:
Q  313 ttatgaaaacagctaatagcttatatgaaagtagttt 349  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  48816507 ttatgaaaacagctaatagcttatattaaaatagttt 48816543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 28340882 - 28340924
Alignment:
Q  298 gctctctagtatagcttatgaaaacagctaatagcttatatga 340  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  28340882 gctctctaggatagcttatgaaaacagcttatagcttatatga 28340924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 38010773 - 38010702
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||| |||||| ||||||||||||  ||  ||||||| |||| |||||||||||||| |||||||||||||||    
T  38010773 taagctgtttttagcttatttccataagt-tctctaggatagattatgaaaacagcttatagcttatatgaaa 38010702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 21453326 - 21453284
Alignment:
Q  298 gctctctagtatagcttatgaaaacagctaatagcttatatga 340  Q
    ||||||||| ||||||||||||||||| | |||||||||||||    
T  21453326 gctctctaggatagcttatgaaaacagtttatagcttatatga 21453284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 351
Target Start/End: Complemental strand, 3468673 - 3468593
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    |||||||||| || |||||||||| || | ||||||| |||| ||||||||| |||| ||| |||||| |||| ||||||||    
T  3468673 taagttgtttccaacttatttcca-caagttctctaggatagattatgaaaaaagcttataacttatacgaaaatagtttga 3468593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 23434196 - 23434240
Alignment:
Q  298 gctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    ||||||| | |||||||||||||| |||||||||||||| |||||    
T  23434196 gctctcttggatagcttatgaaaatagctaatagcttatttgaaa 23434240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 351
Target Start/End: Complemental strand, 16889794 - 16889714
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    |||||||||||||| |||||||||  |  |||||||| ||||||||||||||||||| ||||||| ||| |||  |||||||    
T  16889794 taagttgttttcagattatttccataaa-ctctctagcatagcttatgaaaacagcttatagcttctataaaaacagtttga 16889714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 37588371 - 37588442
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||| |||||||||||||||||||  || ||||| || ||| |||||||||||| || |||||||||||||||    
T  37588371 taagctgttttcagcttatttccataag-ctctccagaataacttatgaaaacaacttatagcttatatgaaa 37588442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 26516422 - 26516379
Alignment:
Q  308 atagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    ||||||||||||||||| | ||| ||||||||||||||||||||    
T  26516422 atagcttatgaaaacagtttataacttatatgaaagtagtttga 26516379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 351
Target Start/End: Original strand, 28586726 - 28586857
Alignment:
Q  216 atttgtgatactgtatgggagacctaa-ggaaatagcttatgacatgtcaacccgtaagttgttttcagcttatttccaccaggctctctagtatagctt 314  Q
    |||||||| ||||| ||||||| || | |||||||||||||||||| ||    |||||| ||||||||||||||||| |  | ||||||||| ||||||     
T  28586726 atttgtgaaactgtttgggagagcttatggaaatagcttatgacatatc----cgtaagctgttttcagcttatttcga-taagctctctaggatagctc 28586820  T
Q  315 atgaaaacagctaatagcttatatgaaagtagtttga 351  Q
     | ||||||||| |||  ||||||||||  |||||||    
T  28586821 gtcaaaacagcttataatttatatgaaaacagtttga 28586857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 14295538 - 14295485
Alignment:
Q  298 gctctctagtatagcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    |||||| || |||||||| |||||||||| |||||||||||||||  |||||||    
T  14295538 gctctccaggatagcttacgaaaacagcttatagcttatatgaaaacagtttga 14295485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 15246855 - 15246814
Alignment:
Q  308 atagcttatgaaaacagctaatagcttatatgaaagtagttt 349  Q
    ||||||||||||||||||| |||||||||| |||| ||||||    
T  15246855 atagcttatgaaaacagctcatagcttatacgaaaatagttt 15246814  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 36542298 - 36542362
Alignment:
Q  275 tgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatga 340  Q
    |||||| | ||||||||||| || |||||||| |||||||||| || ||||| |||||||||||||    
T  36542298 tgtttttaacttatttccacaag-ctctctaggatagcttatggaatcagcttatagcttatatga 36542362  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 39823171 - 39823212
Alignment:
Q  310 agcttatgaaaacagctaatagcttatatgaaagtagtttga 351  Q
    |||||||||||||| ||  |||||||||||||||||||||||    
T  39823171 agcttatgaaaacaacttgtagcttatatgaaagtagtttga 39823212  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 15557295 - 15557335
Alignment:
Q  308 atagcttatgaaaacagctaatagcttatatgaaagtagtt 348  Q
    |||||||||||||||| ||||||||||||| |||| |||||    
T  15557295 atagcttatgaaaacaactaatagcttataagaaaatagtt 15557335  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 342
Target Start/End: Original strand, 32408586 - 32408674
Alignment:
Q  249 agcttatgacatgtcaacccgtaagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||||||||||||||    ||||||||| |||| |||||||||||  || ||||  || |||||||||||||| || | |||||||||||||||    
T  32408586 agcttatgacatgtc----cgtaagttggtttctgcttatttccataag-ctcttcaggatagcttatgaaaatagtttatagcttatatgaaa 32408674  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 37526210 - 37526281
Alignment:
Q  270 taagttgttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||| |||||||||||||||||||  || ||||| || | | |||||||||||| || |||||||||||||||    
T  37526210 taagctgttttcagcttatttccataag-ctctccagaacaacttatgaaaacaacttatagcttatatgaaa 37526281  T

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Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 340
Target Start/End: Original strand, 159990 - 160053
Alignment:
Q  276 gttttcagcttatttccaccaggctctctagtatagcttatgaaaacagctaatagcttatatga 340  Q
    ||||||||||||||||||| || |||| ||| |||||||||||||||| || ||| |||||||||    
T  159990 gttttcagcttatttccacaag-ctctttaggatagcttatgaaaacatcttataacttatatga 160053  T

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Target: scaffold0100 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Complemental strand, 42638 - 42604
Alignment:
Q  308 atagcttatgaaaacagctaatagcttatatgaaa 342  Q
    |||||||||||||||| ||||||||||||||||||    
T  42638 atagcttatgaaaacaactaatagcttatatgaaa 42604  T

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