View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0774_low_13 (Length: 329)
Name: NF0774_low_13
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0774_low_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 96 - 329
Target Start/End: Original strand, 6314942 - 6315175
Alignment:
| Q |
96 |
cacctcctaaggcatatcttctttgaatggcaagaaactacaacagcttaggggaatagtgacctatgacctcaaattcaaacgcatgcaggggacatca |
195 |
Q |
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| T |
6314942 |
cacctcctaaggcatatcttctttgaatggcaagagactacaacagcttaggggaatagtaacctatgacctcaaattcaaacgcatgcaggggacattt |
6315041 |
T |
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| Q |
196 |
tcatcatgtgcagagtttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaa |
295 |
Q |
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| T |
6315042 |
tcatcatgtgcagaatttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaa |
6315141 |
T |
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| Q |
296 |
gtaagcagctttggaatatgcctggcaacaatcc |
329 |
Q |
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| T |
6315142 |
gtaagcagctttggaatatgcctggcaacaatcc |
6315175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 258
Target Start/End: Original strand, 6318086 - 6318236
Alignment:
| Q |
108 |
catatcttctttgaatggcaagaaactacaacagcttaggggaatagtgacctatgacctcaaattcaaacgcatgcaggggacatcatcatcatgtgca |
207 |
Q |
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| T |
6318086 |
catatcttgtttgaatgccaagaggctataaaagtttgggagtatagtgaaatatgaccttaaattcaaacgtatgtaggtcagtt--tcatcatgtgga |
6318183 |
T |
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| Q |
208 |
gag--tttatttttactgtcatcaacaactgcacaacaatgattatgaatggt |
258 |
Q |
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| T |
6318184 |
gagaatttaattttactgtcatcaacagctgcacaacaaggattatgaatggt |
6318236 |
T |
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