View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0774_low_17 (Length: 318)
Name: NF0774_low_17
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0774_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 79 - 317
Target Start/End: Complemental strand, 37877111 - 37876871
Alignment:
| Q |
79 |
agaccaaaacggaaactgcggagatcgaattcatcttaaacatcgtgatttgtttgtcagtgattgacagacggtaggattttcagctagctaggtgtag |
178 |
Q |
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| T |
37877111 |
agaccaaaacggaaactgcggagatcaaattcatcttaaacatcgtgatttgtttgtctgtgattgacagacggtaggattttcagctagctaggtgtag |
37877012 |
T |
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| Q |
179 |
atatgaggaaacaggattagaattttatttgtaggttacacatgctgc---ttctcggagttacattgtataaaatagtaccagcagtcgaagaatatgg |
275 |
Q |
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| T |
37877011 |
atatgaggaaacaggattagaattttctttgtaggttacacatgctgctggttctcggagttacattgtat-aaatagtaccagcagtcaaataatatgg |
37876913 |
T |
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| Q |
276 |
gtggctttaagggtcttaggaatagtttgaagttgctagcat |
317 |
Q |
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| T |
37876912 |
gtggctttaagggtcttaggaatagtttgaagttgctagcat |
37876871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 79 - 317
Target Start/End: Original strand, 23894570 - 23894810
Alignment:
| Q |
79 |
agaccaaaacggaaactgcggagatcgaattcatcttaaacatcgtgatttgtttgtcagtgattgacagacggtaggattttcagctagctaggtgtag |
178 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23894570 |
agaccaaaacggaaactgcggagatcaaattcatcttaaacatcgtgatttgtttgtctgtgattgacagacggtaggattttcagctagctaggtgtag |
23894669 |
T |
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| Q |
179 |
atatgaggaaacaggattagaattttatttgtaggttacacatgctgc---ttctcggagttacattgtataaaatagtaccagcagtcgaagaatatgg |
275 |
Q |
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| T |
23894670 |
atatgaggaaacaggattagaattttctttgtaggttacacatgctgctggttctcggagttacattgtat-aaatagtaccagcagtcaaataatatgg |
23894768 |
T |
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| Q |
276 |
gtggctttaagggtcttaggaatagtttgaagttgctagcat |
317 |
Q |
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| T |
23894769 |
gtggctttaagggtcttaggaatagtttgaagttgctagcat |
23894810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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