View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0774_low_18 (Length: 318)

Name: NF0774_low_18
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0774_low_18
NF0774_low_18
[»] chr1 (2 HSPs)
chr1 (96-230)||(24540984-24541118)
chr1 (144-208)||(24541195-24541259)
[»] chr3 (5 HSPs)
chr3 (96-230)||(3175606-3175740)
chr3 (96-230)||(3175789-3175923)
chr3 (144-229)||(3175976-3176061)
chr3 (144-193)||(3175922-3175971)
chr3 (144-193)||(3175736-3175785)
[»] chr5 (4 HSPs)
chr5 (96-229)||(20964138-20964271)
chr5 (144-208)||(20963994-20964058)
chr5 (144-193)||(20964090-20964139)
chr5 (108-169)||(20964330-20964391)
[»] chr2 (3 HSPs)
chr2 (108-230)||(41524572-41524694)
chr2 (108-230)||(41524916-41525038)
chr2 (108-230)||(41524742-41524858)
[»] chr4 (4 HSPs)
chr4 (146-205)||(16591879-16591938)
chr4 (146-192)||(16602449-16602495)
chr4 (159-205)||(35335585-35335631)
chr4 (159-205)||(35335453-35335499)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 24541118 - 24540984
Alignment:
Q  96 catcatcaacaacatcactctcctgctcattcccctgttaagccttcggttcacactcctttacatcctcctcaccatgccaaacctccaacccatcacc 195  Q
    |||||||| ||||| ||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24541118 catcatcatcaacaacactctcctgctcattcccctattaagtctccggttcacactcctttacatcctcctcaccctgccaaacctccaacccatcacc 24541019  T
Q  196 gccaccaacatcactcaccatcccctgccccttcc 230  Q
    |||||||||||||||||||||||||||||||||||    
T  24541018 gccaccaacatcactcaccatcccctgccccttcc 24540984  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 24541259 - 24541195
Alignment:
Q  144 gttcacactcctttacatcctcctcaccatgccaaacctccaacccatcaccgccaccaacatca 208  Q
    |||||||||||||||||||||||||||| ||| ||||| || |||||||||| ||||||||||||    
T  24541259 gttcacactcctttacatcctcctcaccctgctaaacccccgacccatcaccaccaccaacatca 24541195  T

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Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 3175740 - 3175606
Alignment:
Q  96 catcatcaacaacatcactctcctgctcattcccctgttaagccttcggttcacactcctttacatcctcctcaccatgccaaacctccaacccatcacc 195  Q
    |||||||| || |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  3175740 catcatcatcatcatcactctcctgctcatgcccctattaagccttcgtttcacactcctttacatcctcctcaccctgccaaacctccaacacatcacc 3175641  T
Q  196 gccaccaacatcactcaccatcccctgccccttcc 230  Q
     |||||||||||||||||| |||||||||||||||    
T  3175640 accaccaacatcactcaccttcccctgccccttcc 3175606  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 3175923 - 3175789
Alignment:
Q  96 catcatcaacaacatcactctcctgctcattcccctgttaagccttcggttcacactcctttacatcctcctcaccatgccaaacctccaacccatcacc 195  Q
    |||||||| || |||||||||||||||||| ||||| ||||  || |||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  3175923 catcatcatcatcatcactctcctgctcatgcccctattaaaactccggttcacactcctttacatcctcctcaccctgccaaacctccaactcatcacc 3175824  T
Q  196 gccaccaacatcactcaccatcccctgccccttcc 230  Q
     |||||||||||||||||||||||| |||||||||    
T  3175823 accaccaacatcactcaccatcccccgccccttcc 3175789  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 3176061 - 3175976
Alignment:
Q  144 gttcacactcctttacatcctcctcaccatgccaaacctccaacccatcaccgccaccaacatcactcaccatcccctgccccttc 229  Q
    ||||||||||||||||||||||| |||| ||| ||||| || |||||||||||||||||||||||||||||||||| ||| |||||    
T  3176061 gttcacactcctttacatcctccccaccctgctaaacccccgacccatcaccgccaccaacatcactcaccatcccttgctccttc 3175976  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 3175971 - 3175922
Alignment:
Q  144 gttcacactcctttacatcctcctcaccatgccaaacctccaacccatca 193  Q
    |||||||||||||||||||||| ||| | ||| |||||||||||||||||    
T  3175971 gttcacactcctttacatcctcgtcatcctgcaaaacctccaacccatca 3175922  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 3175785 - 3175736
Alignment:
Q  144 gttcacactcctttacatcctcctcaccatgccaaacctccaacccatca 193  Q
    ||||||||||||||||||| || ||||| ||| ||||| |||||||||||    
T  3175785 gttcacactcctttacatcatcgtcaccctgcaaaacccccaacccatca 3175736  T

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Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 20964138 - 20964271
Alignment:
Q  96 catcatcaacaacatcactctcctgctcattcccctgttaagccttcggttcacactcctttacatcctcctcaccatgccaaacctccaacccatcacc 195  Q
    |||||||| || ||||||||||| || ||| ||||| |||||||| ||||||||||||||||||||| |||||| | |||||||||||||||||||||||    
T  20964138 catcatcatcatcatcactctcccgcacatgcccctattaagcctccggttcacactcctttacatcatcctcatcctgccaaacctccaacccatcacc 20964237  T
Q  196 gccaccaacatcactcaccatcccctgccccttc 229  Q
     |||||||||||||||||||||||| ||||||||    
T  20964238 accaccaacatcactcaccatcccccgccccttc 20964271  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 20963994 - 20964058
Alignment:
Q  144 gttcacactcctttacatcctcctcaccatgccaaacctccaacccatcaccgccaccaacatca 208  Q
    |||||||||||||||||||||||||||| ||| ||||| || |||||||||| |||||| |||||    
T  20963994 gttcacactcctttacatcctcctcaccctgctaaacccccgacccatcaccaccaccagcatca 20964058  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 20964090 - 20964139
Alignment:
Q  144 gttcacactcctttacatcctcctcaccatgccaaacctccaacccatca 193  Q
    |||||||||||| ||||||||| ||||| ||| ||||| |||||||||||    
T  20964090 gttcacactcctatacatcctcgtcaccctgcaaaacccccaacccatca 20964139  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 20964330 - 20964391
Alignment:
Q  108 catcactctcctgctcattcccctgttaagccttcggttcacactcctttacatcctcctca 169  Q
    |||||||||||||||||| ||||| |||| ||| | |||||||| ||||||| ||| |||||    
T  20964330 catcactctcctgctcatgcccctattaaacctccagttcacacacctttacttccccctca 20964391  T

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Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 41524694 - 41524572
Alignment:
Q  108 catcactctcctgctcattcccctgttaagccttcggttcacactcctttacatcctcctcaccatgccaaacctccaacccatcaccgccaccaacatc 207  Q
    ||||||||||| |||||| ||||| |||||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||| |    
T  41524694 catcactctccagctcatgcccctattaagcctccggttcacactcctttacatcctccttaccctaccaaacctccaacccatcaccaccaccaacacc 41524595  T
Q  208 actcaccatcccctgccccttcc 230  Q
    |||||||||||||||| ||||||    
T  41524594 actcaccatcccctgctccttcc 41524572  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 41525038 - 41524916
Alignment:
Q  108 catcactctcctgctcattcccctgttaagccttcggttcacactcctttacatcctcctcaccatgccaaacctccaacccatcaccgccaccaacatc 207  Q
    ||||||||||  |||||| ||||| ||||||||  ||||||||||||||||||||||| | ||||| ||||||||||||||||||||| ||||||||| |    
T  41525038 catcactctctagctcatgcccctattaagcctctggttcacactcctttacatcctctttaccataccaaacctccaacccatcaccaccaccaacacc 41524939  T
Q  208 actcaccatcccctgccccttcc 230  Q
    |||||||||||||||| ||||||    
T  41524938 actcaccatcccctgctccttcc 41524916  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 41524858 - 41524742
Alignment:
Q  108 catcactctcctgctcattcccctgttaagccttcggttcacactcctttacatcctcctcaccatgccaaacctccaacccatcaccgccaccaacatc 207  Q
    ||||||||||| |||||| ||||| |||||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||||      |    
T  41524858 catcactctccagctcatgcccctattaagcctccggttcacactcctttacatcctccttaccctaccaaacctccaacccatcaccaccac------c 41524765  T
Q  208 actcaccatcccctgccccttcc 230  Q
    |||||||||||||||| ||||||    
T  41524764 actcaccatcccctgctccttcc 41524742  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 16591879 - 16591938
Alignment:
Q  146 tcacactcctttacatcctcctcaccatgccaaacctccaacccatcaccgccaccaaca 205  Q
    ||||||||||||||| ||| |||||| ||| ||||||||||||| ||||| |||||||||    
T  16591879 tcacactcctttacacccttctcaccctgctaaacctccaacccgtcaccaccaccaaca 16591938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 16602449 - 16602495
Alignment:
Q  146 tcacactcctttacatcctcctcaccatgccaaacctccaacccatc 192  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||||||    
T  16602449 tcacactcctttacacccttctcaccatgctaaacctccaacccatc 16602495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 35335631 - 35335585
Alignment:
Q  159 catcctcctcaccatgccaaacctccaacccatcaccgccaccaaca 205  Q
    ||||||||||||||||| |||||||||||||||||||| || |||||    
T  35335631 catcctcctcaccatgctaaacctccaacccatcaccgtcatcaaca 35335585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 35335499 - 35335453
Alignment:
Q  159 catcctcctcaccatgccaaacctccaacccatcaccgccaccaaca 205  Q
    ||||||||||| ||||| ||||||||||||||||| ||||| |||||    
T  35335499 catcctcctcatcatgctaaacctccaacccatcatcgccatcaaca 35335453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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