View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0774_low_19 (Length: 317)
Name: NF0774_low_19
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0774_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 8877627 - 8877826
Alignment:
| Q |
1 |
cctggtccaatggcagaagtagtggatttcacattcaaagaaggcaggatcgcgcaatatgtaatcatgaatggtatgcttcttgtaacttagtaacatg |
100 |
Q |
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| T |
8877627 |
cctggtccaatggcagaagtagtagatttcacattcaaagaaggctggatcgcacaatatgtaatcatgaatggtatgctgcttgtaacttagtaacatg |
8877726 |
T |
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| Q |
101 |
ttctaccctcactaagcttaggtctaaccattaccctttattgttagaattcaaaaatgatgactgcttgtttatatctcaatttaaatttctgaaaatc |
200 |
Q |
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| T |
8877727 |
ttctaccctcactaagcttaggtctaaccattaccctttattgttagaattcaaaaatgatgaatgcttgtttatatctcaatttaaatttctgaaaatc |
8877826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 8883385 - 8883460
Alignment:
| Q |
197 |
aatctggatttcacatcctaattgtattaacatagtgaagaattgttggaacactcaattcattggctgtcctatg |
272 |
Q |
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| T |
8883385 |
aatctggatttcacatcctaattgtattaacatagtgaagaattgttggaacactcaattcattggctgtcctatg |
8883460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 22136171 - 22136356
Alignment:
| Q |
3 |
tggtccaatggcagaagtagtggatttcacattcaaagaaggcaggatcgcgcaatatgtaatcatgaatggtatgcttcttgtaacttagtaacatgtt |
102 |
Q |
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| T |
22136171 |
tggtccaatgggagaagaggtagattccacattcaaaaaaggcttgatagaacaatttgtaaccaggaatggtatgttgcttgtaactttgtaacctatt |
22136270 |
T |
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| Q |
103 |
ctaccctcactaagcttaggtctaaccattaccctttattgttagaattcaaaaatgatgactgcttgtttatatctcaatttaaa |
188 |
Q |
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| T |
22136271 |
caactctcacaaagcttagatcttaccatttccctatccttctagaatttaaaaatggtgactgtctctttgtctctcaatttaaa |
22136356 |
T |
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