View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0774_low_24 (Length: 310)
Name: NF0774_low_24
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0774_low_24 |
 | |
|
| [»] scaffold0002 (3 HSPs) |
| | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0002 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 80 - 251
Target Start/End: Complemental strand, 144408 - 144237
Alignment:
| Q |
80 |
cagagaaggatgtgcttgatatgttacaaccttcatttaaccttaggaagctgattattaggttgtatggtggaacaagctttccgagttggttgggtga |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
144408 |
cagagaaggatgtgcttgatatgttacaaccttcatttaaccttaggaagctgattattaggttgtatggtggaacaagctttccgagttggttgggtga |
144309 |
T |
|
| Q |
180 |
tcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccaccactagg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
144308 |
tcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccaccactagg |
144237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 80 - 251
Target Start/End: Complemental strand, 152713 - 152542
Alignment:
| Q |
80 |
cagagaaggatgtgcttgatatgttacaaccttcatttaaccttaggaagctgattattaggttgtatggtggaacaagctttccgagttggttgggtga |
179 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
152713 |
cagagaaggatgtgcttgatattttacaaccttcatttaaccttaggaagctgattattaggttgtatggtggaacaagcttcccgagttggttgggtga |
152614 |
T |
|
| Q |
180 |
tcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccaccactagg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
152613 |
tcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccaccactagg |
152542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 81 - 251
Target Start/End: Complemental strand, 134359 - 134189
Alignment:
| Q |
81 |
agagaaggatgtgcttgatatgttacaaccttcatttaaccttaggaagctgattattaggttgtatggtggaacaagctttccgagttggttgggtgat |
180 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||| ||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
134359 |
agagaaagatgtgcttgatatgttgcaaccatcatttaacctgaggaaactgagcattagcttgtatggtgggacaagctttccgagttggttgggtgat |
134260 |
T |
|
| Q |
181 |
cctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccaccactagg |
251 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
134259 |
ccttttttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccatcactagg |
134189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 80 - 251
Target Start/End: Original strand, 13334504 - 13334675
Alignment:
| Q |
80 |
cagagaaggatgtgcttgatatgttacaaccttcatttaaccttaggaagctgattattaggttgtatggtggaacaagctttccgagttggttgggtga |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13334504 |
cagagaaggatgtgcttgatatgttacaaccttcatttaaccttaggaagctgattattaggttgtatggtggaacaagctttccgagttggttgggtga |
13334603 |
T |
|
| Q |
180 |
tcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccaccactagg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13334604 |
tcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccaccactagg |
13334675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 80 - 251
Target Start/End: Original strand, 13162580 - 13162751
Alignment:
| Q |
80 |
cagagaaggatgtgcttgatatgttacaaccttcatttaaccttaggaagctgattattaggttgtatggtggaacaagctttccgagttggttgggtga |
179 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13162580 |
cagagaaggatgtgcttgatattttacaaccttcatttaaccttaggaagctgattattaggttgtatggtggaacaagcttcccgagttggttgggtga |
13162679 |
T |
|
| Q |
180 |
tcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccaccactagg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13162680 |
tcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccaccactagg |
13162751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 81 - 251
Target Start/End: Original strand, 13345684 - 13345854
Alignment:
| Q |
81 |
agagaaggatgtgcttgatatgttacaaccttcatttaaccttaggaagctgattattaggttgtatggtggaacaagctttccgagttggttgggtgat |
180 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13345684 |
agagaaagatgtgcttgatatgttgcaaccatcatttaacctgaggaaactgagcattcggttgtatggtgggacaagctttccgagttggttgggtgat |
13345783 |
T |
|
| Q |
181 |
cctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccaccactagg |
251 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13345784 |
ccattgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccaccactagg |
13345854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 81 - 251
Target Start/End: Original strand, 13172629 - 13172799
Alignment:
| Q |
81 |
agagaaggatgtgcttgatatgttacaaccttcatttaaccttaggaagctgattattaggttgtatggtggaacaagctttccgagttggttgggtgat |
180 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||| ||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13172629 |
agagaaagatgtgcttgatatgttgcaaccatcatttaacctgaggaaactgagcattagcttgtatggtgggacaagctttccgagttggttgggtgat |
13172728 |
T |
|
| Q |
181 |
cctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccaccactagg |
251 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13172729 |
ccttttttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccatcactagg |
13172799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 10090449 - 10090552
Alignment:
| Q |
142 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
241 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||| ||||||||||||||| ||| | |||||| ||||||||||||||||| ||||||| |
|
|
| T |
10090449 |
ttgtatggtgggacaagctttccgagttggttgggaaattcttcgttttctaacatggtatccctctgtatcagtaattgtgaatattgtgtgacacttc |
10090548 |
T |
|
| Q |
242 |
cacc |
245 |
Q |
| |
|
|||| |
|
|
| T |
10090549 |
cacc |
10090552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 10197332 - 10197435
Alignment:
| Q |
142 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
241 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||| ||||||||||||||| ||| | |||||| ||||||||||||||||| ||||||| |
|
|
| T |
10197332 |
ttgtatggtgggacaagctttccgagttggttgggaaattcttcgttttctaacatggtatccctctgtatcagtaattgtgaatattgtgtgacacttc |
10197431 |
T |
|
| Q |
242 |
cacc |
245 |
Q |
| |
|
|||| |
|
|
| T |
10197432 |
cacc |
10197435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 10128584 - 10128687
Alignment:
| Q |
142 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
241 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| || || | ||| | ||||||||||||||| | ||||||| |
|
|
| T |
10128584 |
ttgtatggtgggacaagctttccgagttggttgggaaattctttgttttctaacatggtatctctgcgcatcactaattgtgaatattgtatgacacttc |
10128683 |
T |
|
| Q |
242 |
cacc |
245 |
Q |
| |
|
|||| |
|
|
| T |
10128684 |
cacc |
10128687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 10665185 - 10665288
Alignment:
| Q |
142 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
241 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || ||| ||||||||||||||| ||| | |||||| ||||||||||||||||| | ||||| |
|
|
| T |
10665185 |
ttgtatggtggaacaagctttccaagttggttgggaaattcttcgttttctaacatggtatccctctgtatcagtaattgtgaatattgtgtgatacttc |
10665284 |
T |
|
| Q |
242 |
cacc |
245 |
Q |
| |
|
|||| |
|
|
| T |
10665285 |
cacc |
10665288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 10033659 - 10033762
Alignment:
| Q |
142 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
241 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| || | | ||| | ||||||||||||||| | ||||||| |
|
|
| T |
10033659 |
ttgtatggtgggacaagctttccgagttggttgggaaattctttgttttctaacatggtatctcttcgcatcactaattgtgaatattgtatgacacttc |
10033758 |
T |
|
| Q |
242 |
cacc |
245 |
Q |
| |
|
|||| |
|
|
| T |
10033759 |
cacc |
10033762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 11158427 - 11158317
Alignment:
| Q |
142 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
241 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| ||| ||| ||||||||||||||||| | | || ||||||| ||||||||||||||||| |
|
|
| T |
11158427 |
ttgtatggtgggacaagctttccaagttggttgggagattcttcattttctaacatggtgtcacttagcatagaaaattgtggatattgtgtaacacttc |
11158328 |
T |
|
| Q |
242 |
caccactagga |
252 |
Q |
| |
|
||||||||||| |
|
|
| T |
11158327 |
caccactagga |
11158317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 10262357 - 10262460
Alignment:
| Q |
142 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
241 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||| ||||| ||||||||| || || | ||| | ||||||||||||||| | ||||||| |
|
|
| T |
10262357 |
ttgtatggtgggacaagctttccgagttggttgggaaattcttcgttttataacatggtatctctgcgcatcactaattgtgaatattgtatgacacttc |
10262456 |
T |
|
| Q |
242 |
cacc |
245 |
Q |
| |
|
|||| |
|
|
| T |
10262457 |
cacc |
10262460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 11147264 - 11147154
Alignment:
| Q |
142 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcga-attgtgaatattgtgtaacactt |
240 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| ||| ||| ||||||||||||||||| ||| || || | |||||| ||||||||| |||||| |
|
|
| T |
11147264 |
ttgtatggtgggacaagctttccaagttggttgggagattcttcattttctaacatggtgtcactgtcaat-tcaacattgtggatattgtgtgacactt |
11147166 |
T |
|
| Q |
241 |
ccaccactagga |
252 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11147165 |
ccaccactagga |
11147154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 8862945 - 8863055
Alignment:
| Q |
142 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
241 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||||| ||| ||| ||||||||||||||||| |||| || ||||||| ||||||||| ||||||| |
|
|
| T |
8862945 |
ttgtacggtgggacaagctttccatgttggttgggagattcttcattttctaacatggtgtcactgtgcattgaaaattgtggatattgtgtgacacttc |
8863044 |
T |
|
| Q |
242 |
caccactagga |
252 |
Q |
| |
|
||||||||||| |
|
|
| T |
8863045 |
caccactagga |
8863055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 10890966 - 10891075
Alignment:
| Q |
143 |
tgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttcc |
242 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| || ||| ||| ||||||||||||||||| |||| || ||||||| ||||||||| |||||||| |
|
|
| T |
10890966 |
tgtatggtgggacaagctttccatgttggttaggagattcttcattttctaacatggtgtcactgtgcattgaaaattgtggatattgtgtgacacttcc |
10891065 |
T |
|
| Q |
243 |
accactagga |
252 |
Q |
| |
|
|||||||||| |
|
|
| T |
10891066 |
accactagga |
10891075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 10432454 - 10432351
Alignment:
| Q |
142 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
241 |
Q |
| |
|
||||||| ||| |||||||||||||||||| |||| || ||| |||||| ||||||| ||| | |||||| ||||||||||||||||| ||||||| |
|
|
| T |
10432454 |
ttgtatgatggtacaagctttccgagttggctgggaaattcttcgttttcggacatggtatccctctgtatcagtaattgtgaatattgtgtgacacttc |
10432355 |
T |
|
| Q |
242 |
cacc |
245 |
Q |
| |
|
|||| |
|
|
| T |
10432354 |
cacc |
10432351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 11770893 - 11770996
Alignment:
| Q |
142 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
241 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| || ||| |||||||||||||| ||| | |||| ||||||||||||||||| ||||||| |
|
|
| T |
11770893 |
ttgtatggtgggacaagctttccgagttggctgggaaattcttcattttctaacatggtatccctccgtattagtaattgtgaatattgtgtgacacttc |
11770992 |
T |
|
| Q |
242 |
cacc |
245 |
Q |
| |
|
|||| |
|
|
| T |
11770993 |
cacc |
11770996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 10582272 - 10582378
Alignment:
| Q |
145 |
tatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccac |
244 |
Q |
| |
|
||||| || ||||| ||||| ||||||||||| || ||| ||||||||||||||| ||| | | ||| | ||||||||||||||||| |||||||||| |
|
|
| T |
10582272 |
tatggcgggacaagttttcctagttggttgggaaattcttcgttttctaacatggtatccctccgcatcactaattgtgaatattgtgtgacacttccac |
10582371 |
T |
|
| Q |
245 |
cactagg |
251 |
Q |
| |
|
|| |||| |
|
|
| T |
10582372 |
caatagg |
10582378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 10362207 - 10362108
Alignment:
| Q |
146 |
atggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccacc |
245 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| || ||| ||||||||||||||| ||| | | ||| | ||||||||||||||||| | ||||||||| |
|
|
| T |
10362207 |
atggtgggacaagttttcctagttggttgggaaattcttcgttttctaacatggtatccctccgcatcactaattgtgaatattgtgtgatacttccacc |
10362108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 10374255 - 10374154
Alignment:
| Q |
142 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
241 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| | ||| ||||| ||||||||| || | ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
10374255 |
ttgtatggtgggacaagctttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttc |
10374156 |
T |
|
| Q |
242 |
ca |
243 |
Q |
| |
|
|| |
|
|
| T |
10374155 |
ca |
10374154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 13397148 - 13397205
Alignment:
| Q |
145 |
tatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgt |
202 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||| ||| || ||||||||||||||||| |
|
|
| T |
13397148 |
tatggtgggataagctttccaagttggttgggggattgttcgttttctaacatggtgt |
13397205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 11486694 - 11486756
Alignment:
| Q |
142 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtcc |
204 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
11486694 |
ttgtatggtgggacaagttttccgaattggttgggtgattcttcattttctaaaatggtgtcc |
11486756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 44956084 - 44955984
Alignment:
| Q |
145 |
tatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttccac |
244 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||| ||| || |||||||||||||| |||| | || ||| ||||| | ||||||||||||||||||| |
|
|
| T |
44956084 |
tatggtgggacaagctttccaaattggttgggagatttttcgttttctaacatggcgtccctttgcatcagtaattgagggtattgtgtaacacttccac |
44955985 |
T |
|
| Q |
245 |
c |
245 |
Q |
| |
|
| |
|
|
| T |
44955984 |
c |
44955984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 176
Target Start/End: Complemental strand, 56012 - 55978
Alignment:
| Q |
142 |
ttgtatggtggaacaagctttccgagttggttggg |
176 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
56012 |
ttgtatggtgggacaagctttccgagttggttggg |
55978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 20151 - 20183
Alignment:
| Q |
148 |
ggtggaacaagctttccgagttggttgggtgat |
180 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
20151 |
ggtggaacaagctttccgaattggttgggtgat |
20183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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