View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0774_low_25 (Length: 305)
Name: NF0774_low_25
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0774_low_25 |
 | |
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| [»] scaffold1360 (1 HSPs) |
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Alignment Details
Target: scaffold1360 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold1360
Description:
Target: scaffold1360; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 1960 - 1781
Alignment:
| Q |
1 |
tgcaatagttgtcttgccagtaccgccaatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggt |
100 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1960 |
tgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggt |
1861 |
T |
|
| Q |
101 |
ttgtcaattccaacaagtctttttgatttaaaaacacacgaccaatgcttactcaatttctccaacacacgagtgatgat |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |
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|
| T |
1860 |
ttgtcaattccaacaagtctttttgatttaacaacacacaactgatgcttactcaatttctccaacacacgagtgatgat |
1781 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 3932965 - 3932786
Alignment:
| Q |
1 |
tgcaatagttgtcttgccagtaccgccaatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggt |
100 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3932965 |
tgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggt |
3932866 |
T |
|
| Q |
101 |
ttgtcaattccaacaagtctttttgatttaaaaacacacgaccaatgcttactcaatttctccaacacacgagtgatgat |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |
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|
| T |
3932865 |
ttgtcaattccaacaagtctttttgatttaacaacacacaactgatgcttactcaatttctccaacacacgagtgatgat |
3932786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 3817723 - 3817853
Alignment:
| Q |
1 |
tgcaatagttgtcttgccagtaccgccaatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggt |
100 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
3817723 |
tgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatccgcaattggt |
3817822 |
T |
|
| Q |
101 |
ttgtcaattccaacaagtctttttgatttaa |
131 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |
|
|
| T |
3817823 |
ttgtcaattccaacaagttcttttgagttaa |
3817853 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 4218782 - 4218907
Alignment:
| Q |
1 |
tgcaatagttgtcttgccagtaccgccaatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggt |
100 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| | | |||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
4218782 |
tgcaatagttgtcttgccaataccgcccataccccaaattccaataacacggacctttcccgactctttgtttaacaatgaattcaaatgtgcaattggt |
4218881 |
T |
|
| Q |
101 |
ttgtcaattccaacaagtctttttga |
126 |
Q |
| |
|
||||| ||||||| ||||| |||||| |
|
|
| T |
4218882 |
ttgtccattccaataagtccttttga |
4218907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 3919741 - 3919654
Alignment:
| Q |
1 |
tgcaatagttgtcttgccagtaccgccaatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaa |
88 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3919741 |
tgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaa |
3919654 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 3801725 - 3801843
Alignment:
| Q |
1 |
tgcaatagttgtcttgccagtaccgccaatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggt |
100 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| | | |||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
3801725 |
tgcaatagttgtcttgccaataccgcccataccccaaattccaataacacggacctttcccgactctttgtttaacaatgaattcaaatgtgcaattggt |
3801824 |
T |
|
| Q |
101 |
ttgtcaattccaacaagtc |
119 |
Q |
| |
|
|||| ||||||| ||||| |
|
|
| T |
3801825 |
ctgtccattccaataagtc |
3801843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 4010135 - 4010265
Alignment:
| Q |
1 |
tgcaatagttgtcttgccagtaccgccaatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggt |
100 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||||||||||| |||| ||||| |||||||||||| | ||||||||||||||||| |||||||| | |
|
|
| T |
4010135 |
tgcaatagttgtcttgccaatacttcccatgccccaaattccaatgacactgaccttttctgactctttttgtaacaatgaattcaaatgtgcaattgat |
4010234 |
T |
|
| Q |
101 |
ttgtcaattccaacaagtctttttgatttaa |
131 |
Q |
| |
|
||||||||||||| ||||| |||||| |||| |
|
|
| T |
4010235 |
ttgtcaattccaataagtccttttgagttaa |
4010265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 3810155 - 3810285
Alignment:
| Q |
1 |
tgcaatagttgtcttgccagtaccgccaatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggt |
100 |
Q |
| |
|
||||||||||||||||||| |||| || || ||||||||||| |||||| || ||| || ||||||||||||||||||||| ||||||| || ||| | | |
|
|
| T |
3810155 |
tgcaatagttgtcttgccaataccacccataccccaaattccgataacaggggccttttgtgactctttctttaacaatgatttcaaatgtgaaatagat |
3810254 |
T |
|
| Q |
101 |
ttgtcaattccaacaagtctttttgatttaa |
131 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |
|
|
| T |
3810255 |
ttgtcaattccaacaagttcttttgatttaa |
3810285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 3987134 - 3987264
Alignment:
| Q |
1 |
tgcaatagttgtcttgccagtaccgccaatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggt |
100 |
Q |
| |
|
||||||||||||||||||| | || || |||||||||||||| |||||||||| || |||||||||||||||||||||||| |||| |||||||| | |
|
|
| T |
3987134 |
tgcaatagttgtcttgccaatgccaggcataccccaaattccaatcacacggaccttttgtgactctttctttaacaatgaatttaaatgtgcaattgat |
3987233 |
T |
|
| Q |
101 |
ttgtcaattccaacaagtctttttgatttaa |
131 |
Q |
| |
|
||||||||||||| ||||| |||||| |||| |
|
|
| T |
3987234 |
ttgtcaattccaataagtccttttgagttaa |
3987264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 4002439 - 4002562
Alignment:
| Q |
2 |
gcaatagttgtcttgccagtaccgccaatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggtt |
101 |
Q |
| |
|
|||||||||||||||||| |||| || || |||||||||||||| |||||||||| |||| ||| || ||||||||| | |||| ||||| ||||| |
|
|
| T |
4002439 |
gcaatagttgtcttgccaatacctcccataccccaaattccaatgacacggaccttttctaactgttgacgtaacaatgattctaaatgtgcaactggtt |
4002538 |
T |
|
| Q |
102 |
tgtcaattccaacaagtctttttg |
125 |
Q |
| |
|
|| ||||||||| ||||| ||||| |
|
|
| T |
4002539 |
tgccaattccaataagtccttttg |
4002562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 4025366 - 4025489
Alignment:
| Q |
2 |
gcaatagttgtcttgccagtaccgccaatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggtt |
101 |
Q |
| |
|
|||||||||||||||||| |||| || || |||||||||||||||||||| |||| ||||||||||| |||||| || | |||| || ||||||| |
|
|
| T |
4025366 |
gcaatagttgtcttgccaatacctcccataccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattctaaatgagccattggtt |
4025465 |
T |
|
| Q |
102 |
tgtcaattccaacaagtctttttg |
125 |
Q |
| |
|
|| ||||||||| ||||| ||||| |
|
|
| T |
4025466 |
tgccaattccaataagtccttttg |
4025489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 3954408 - 3954345
Alignment:
| Q |
2 |
gcaatagttgtcttgccagtaccgccaatgccccaaattccaataacacggacctgttctgact |
65 |
Q |
| |
|
|||||||||||||||||| |||| || || |||||||||||||| |||| |||| |||||||| |
|
|
| T |
3954408 |
gcaatagttgtcttgccaatacctcccataccccaaattccaatgacacaaaccttttctgact |
3954345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 13398090 - 13398219
Alignment:
| Q |
2 |
gcaatagttgtcttgccagtaccgccaatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggtt |
101 |
Q |
| |
|
|||||||||||||| ||| |||| || || |||||||| ||||| || || |||| ||||||||||| | |||||||| | |||| |||||||| || |
|
|
| T |
13398090 |
gcaatagttgtctttccaatacctcccataccccaaataccaattacgcgaaccttttctgactcttgatgtaacaatggttctaaatgtgcaattgctt |
13398189 |
T |
|
| Q |
102 |
tgtcaattccaacaagtctttttgatttaa |
131 |
Q |
| |
|
| |||||||||| ||||| ||||| ||||| |
|
|
| T |
13398190 |
tctcaattccaataagtccttttgttttaa |
13398219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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