View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0774_low_29 (Length: 288)

Name: NF0774_low_29
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0774_low_29
NF0774_low_29
[»] chr3 (6 HSPs)
chr3 (51-226)||(36496953-36497128)
chr3 (104-201)||(36502332-36502428)
chr3 (139-186)||(36501618-36501665)
chr3 (154-200)||(35653122-35653167)
chr3 (155-207)||(2288429-2288480)
chr3 (145-181)||(5492251-5492287)
[»] chr8 (3 HSPs)
chr8 (110-175)||(36228536-36228601)
chr8 (110-175)||(32318075-32318140)
chr8 (117-200)||(7088901-7088983)
[»] chr1 (5 HSPs)
chr1 (141-181)||(26284645-26284685)
chr1 (140-175)||(19138872-19138907)
chr1 (162-207)||(47693970-47694014)
chr1 (111-175)||(13649499-13649563)
chr1 (145-201)||(15248876-15248931)
[»] chr5 (3 HSPs)
chr5 (139-181)||(39933456-39933498)
chr5 (139-181)||(39933559-39933601)
chr5 (117-201)||(22967147-22967230)
[»] chr4 (2 HSPs)
chr4 (139-200)||(49574078-49574139)
chr4 (141-201)||(46577503-46577563)
[»] chr6 (2 HSPs)
chr6 (155-207)||(8172950-8173002)
chr6 (139-198)||(30373077-30373135)
[»] scaffold0006 (1 HSPs)
scaffold0006 (140-175)||(139308-139343)
[»] chr2 (2 HSPs)
chr2 (139-198)||(3769332-3769390)
chr2 (117-201)||(44944038-44944121)
[»] scaffold0025 (1 HSPs)
scaffold0025 (139-181)||(150370-150412)
[»] chr7 (1 HSPs)
chr7 (139-168)||(17917127-17917156)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 51 - 226
Target Start/End: Complemental strand, 36497128 - 36496953
Alignment:
Q  51 cagagacaagacggcggcgagagaagatcacaaggggttgaattgactatatgctgcacttttaataattaaataacacagtaaatactgatctaagggt 150  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36497128 cagagacgagacggcggcgagagaagatcacaaggggttgaattgactatatgctgcagttttaataattaaataacacagtaaatactgatctaagggt 36497029  T
Q  151 tgtgatttaaccctctcatctctcacaataacaaccactctcacttgatatatatatcatttatcatttaaccaca 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36497028 tgtgatttaaccctctcatctctcacaataacaaccactctcacttgatatatatatcatttatcatttaaccaca 36496953  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 36502332 - 36502428
Alignment:
Q  104 ctgcacttttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 201  Q
    ||||| |||| | ||||||||| ||||||||| | | ||| || ||||  |||| ||||||||||||||||||||||| |||  ||||||||||||||    
T  36502332 ctgcaatttttaaaattaaatatcacagtaaagattaatccaatggttaggattaaaccctctcatctctcacaataa-aactcctctcacttgatat 36502428  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 36501618 - 36501665
Alignment:
Q  139 tgatctaagggttgtgatttaaccctctcatctctcacaataacaacc 186  Q
    ||||| ||||||||||| |||| |||||||||||||||||||| ||||    
T  36501618 tgatccaagggttgtgacttaatcctctcatctctcacaataaaaacc 36501665  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 35653167 - 35653122
Alignment:
Q  154 gatttaaccctctcatctctcacaataacaaccactctcacttgata 200  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||    
T  35653167 gatttaaccctctcatctctcacaataa-aactcctctcacttgata 35653122  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 2288429 - 2288480
Alignment:
Q  155 atttaaccctctcatctctcacaataacaaccactctcacttgatatatatat 207  Q
    ||||||||||||||||||||||||||| |||  |||| | |||||||||||||    
T  2288429 atttaaccctctcatctctcacaataa-aactcctcttatttgatatatatat 2288480  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 5492251 - 5492287
Alignment:
Q  145 aagggttgtgatttaaccctctcatctctcacaataa 181  Q
    |||||||||||||||||||||||| |||||| |||||    
T  5492251 aagggttgtgatttaaccctctcacctctcataataa 5492287  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 36228601 - 36228536
Alignment:
Q  110 ttttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctca 175  Q
    |||||| | |||| ||||||| |||| | |||||||||||||||||||| ||||||||||||||||    
T  36228601 ttttaaaatttaagtaacacaataaagattgatctaagggttgtgatttcaccctctcatctctca 36228536  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 32318140 - 32318075
Alignment:
Q  110 ttttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctca 175  Q
    |||||| |||||| ||||||| || | | ||||| ||||||||| |||||||||||||||||||||    
T  32318140 ttttaaaaattaagtaacacaatatagattgatccaagggttgtaatttaaccctctcatctctca 32318075  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 7088983 - 7088901
Alignment:
Q  117 aattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgata 200  Q
    ||||||||| || |||||  | ||||| ||||| |||||||||  ||||||| |||||| ||||| ||||||||||||||||||    
T  7088983 aattaaatatcatagtaatgattgatccaagggctgtgatttactcctctcacctctcataataa-aaccactctcacttgata 7088901  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 26284685 - 26284645
Alignment:
Q  141 atctaagggttgtgatttaaccctctcatctctcacaataa 181  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  26284685 atctaagggttgtgatttaaccctctcatctctcataataa 26284645  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 19138907 - 19138872
Alignment:
Q  140 gatctaagggttgtgatttaaccctctcatctctca 175  Q
    |||| |||||||||||||||||||||||||||||||    
T  19138907 gatccaagggttgtgatttaaccctctcatctctca 19138872  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 47694014 - 47693970
Alignment:
Q  162 cctctcatctctcacaataacaaccactctcacttgatatatatat 207  Q
    |||||||||||||||||||| |||  ||||||||||||||||||||    
T  47694014 cctctcatctctcacaataa-aactcctctcacttgatatatatat 47693970  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 13649499 - 13649563
Alignment:
Q  111 tttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctca 175  Q
    ||||| |||||| ||||||| | || |  |||| |||||||||||||||||||| ||||||||||    
T  13649499 tttaaaaattaagtaacacaattaagatggatccaagggttgtgatttaaccctatcatctctca 13649563  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 15248931 - 15248876
Alignment:
Q  145 aagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 201  Q
    ||||||| ||||||||||||||||||||||||  ||| || | ||||||||||||||    
T  15248931 aagggttatgatttaaccctctcatctctcactgtaa-aagccctctcacttgatat 15248876  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 39933498 - 39933456
Alignment:
Q  139 tgatctaagggttgtgatttaaccctctcatctctcacaataa 181  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  39933498 tgatcaaagggttatgatttaaccctctcatctctcacaataa 39933456  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 39933559 - 39933601
Alignment:
Q  139 tgatctaagggttgtgatttaaccctctcatctctcacaataa 181  Q
    ||||| ||||||| |||||||||||||| ||||||||||||||    
T  39933559 tgatccaagggttatgatttaaccctcttatctctcacaataa 39933601  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 22967147 - 22967230
Alignment:
Q  117 aattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 201  Q
    ||||||| |||||| |||| | | |||||| |||   ||| |||||||||||||||||||||||| || | ||||||||||||||    
T  22967147 aattaaagaacacaataaaaattaatctaatggtcaggatctaaccctctcatctctcacaataaaaaac-ctctcacttgatat 22967230  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 49574139 - 49574078
Alignment:
Q  139 tgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgata 200  Q
    |||||||||||||||||||||||||||||| ||||||   ||| |||  |||||||||||||    
T  49574139 tgatctaagggttgtgatttaaccctctcacctctcattttaagaactcctctcacttgata 49574078  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 46577563 - 46577503
Alignment:
Q  141 atctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 201  Q
    |||||||||||  |||| |||||||||| |||||| ||||| || ||||||||||||||||    
T  46577563 atctaagggttaggattcaaccctctcacctctcataataaaaagcactctcacttgatat 46577503  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 8173002 - 8172950
Alignment:
Q  155 atttaaccctctcatctctcacaataacaaccactctcacttgatatatatat 207  Q
    |||| ||||||||||||||||| |||| || | ||||||||||||||||||||    
T  8173002 atttcaccctctcatctctcaccataaaaatctctctcacttgatatatatat 8172950  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 30373077 - 30373135
Alignment:
Q  139 tgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttga 198  Q
    ||||| ||||||||| ||||||| ||||||||||||| ||||| |||| |||||||||||    
T  30373077 tgatccaagggttgtaatttaacactctcatctctcataataaaaacc-ctctcacttga 30373135  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 175
Target Start/End: Original strand, 139308 - 139343
Alignment:
Q  140 gatctaagggttgtgatttaaccctctcatctctca 175  Q
    |||| |||||||||||||||||||||||||||||||    
T  139308 gatccaagggttgtgatttaaccctctcatctctca 139343  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 3769332 - 3769390
Alignment:
Q  139 tgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttga 198  Q
    ||||| ||||||||| | ||||| ||||||||||||||||||| |||| |||||||||||    
T  3769332 tgatccaagggttgtaacttaacactctcatctctcacaataaaaacc-ctctcacttga 3769390  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 44944038 - 44944121
Alignment:
Q  117 aattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 201  Q
    ||||||| |||||| |||| | | |||||| |||   ||| |||||||||||||||||||||||| || || |||||||||||||    
T  44944038 aattaaagaacacaataaaaattaatctaatggtcaggatctaaccctctcatctctcacaataaaaaaca-tctcacttgatat 44944121  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 150412 - 150370
Alignment:
Q  139 tgatctaagggttgtgatttaaccctctcatctctcacaataa 181  Q
    ||||| ||||||| || ||||||||||||||||||||||||||    
T  150412 tgatcgaagggttatggtttaaccctctcatctctcacaataa 150370  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 168
Target Start/End: Complemental strand, 17917156 - 17917127
Alignment:
Q  139 tgatctaagggttgtgatttaaccctctca 168  Q
    ||||||||||||||||||||||||||||||    
T  17917156 tgatctaagggttgtgatttaaccctctca 17917127  T

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