View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0774_low_37 (Length: 265)

Name: NF0774_low_37
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0774_low_37
NF0774_low_37
[»] chr5 (6 HSPs)
chr5 (110-192)||(873852-873934)
chr5 (136-192)||(37995790-37995847)
chr5 (136-192)||(28010272-28010329)
chr5 (80-111)||(873982-874013)
chr5 (136-190)||(13843588-13843643)
chr5 (136-192)||(38131658-38131715)
[»] chr6 (4 HSPs)
chr6 (134-192)||(30539124-30539183)
chr6 (136-192)||(1408902-1408959)
chr6 (136-192)||(12134639-12134696)
chr6 (136-192)||(24055265-24055322)
[»] chr8 (9 HSPs)
chr8 (136-192)||(3184059-3184116)
chr8 (136-192)||(23027984-23028041)
chr8 (136-192)||(31766892-31766949)
chr8 (136-192)||(32931297-32931354)
chr8 (136-185)||(21653217-21653267)
chr8 (136-192)||(18905747-18905804)
chr8 (136-192)||(36997057-36997114)
chr8 (136-191)||(22277415-22277471)
chr8 (147-190)||(40754346-40754390)
[»] chr4 (11 HSPs)
chr4 (136-192)||(48843173-48843230)
chr4 (136-185)||(51469377-51469427)
chr4 (136-192)||(990732-990789)
chr4 (136-192)||(53738364-53738421)
chr4 (133-190)||(45427410-45427468)
chr4 (136-192)||(15665043-15665100)
chr4 (136-192)||(29669518-29669575)
chr4 (136-192)||(29734452-29734509)
chr4 (136-192)||(52214506-52214563)
chr4 (136-191)||(13254295-13254351)
chr4 (136-183)||(53740073-53740121)
[»] chr3 (5 HSPs)
chr3 (136-192)||(24860216-24860273)
chr3 (134-192)||(54368928-54368987)
chr3 (135-192)||(27219219-27219277)
chr3 (136-192)||(45443171-45443228)
chr3 (136-192)||(4255401-4255458)
[»] chr2 (6 HSPs)
chr2 (136-192)||(25441587-25441644)
chr2 (136-192)||(10849647-10849704)
chr2 (136-190)||(43169133-43169188)
chr2 (136-190)||(43195675-43195730)
chr2 (135-192)||(21214357-21214415)
chr2 (136-184)||(3977167-3977216)
[»] chr1 (8 HSPs)
chr1 (136-192)||(4022281-4022338)
chr1 (136-192)||(45264554-45264611)
chr1 (135-192)||(35926377-35926435)
chr1 (134-192)||(8520391-8520450)
chr1 (134-192)||(33879934-33879993)
chr1 (134-192)||(33964262-33964321)
chr1 (136-192)||(2697487-2697544)
chr1 (134-189)||(43423191-43423247)
[»] chr7 (7 HSPs)
chr7 (135-192)||(257423-257481)
chr7 (136-192)||(1663760-1663817)
chr7 (136-192)||(28909923-28909980)
chr7 (136-192)||(43168049-43168106)
chr7 (138-187)||(29780352-29780402)
chr7 (136-184)||(40121782-40121831)
chr7 (135-190)||(40122084-40122140)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 873934 - 873852
Alignment:
Q  110 atgcattgcaaatcttcaatacgtactgttggaaatcccgcctttattgcggtccgcccctgtggcctaaattgcggcctttg 192  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  873934 atgcattgcaaatcttcaatacatactgttggaaatcccgcctttattgcggtccgcccctgtggcctaaattgcggcctttg 873852  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 37995847 - 37995790
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||||||||||||| |||||| || |||||||||||||||||||    
T  37995847 tgttggaaattccgcctttattgcggtctgcccctagtcgcctaaattgcggcctttg 37995790  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 28010329 - 28010272
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||||||||||||| |||||| ||  ||||||||||||||||||    
T  28010329 tgttggaaattccgcctttattgcggtctgcccctagtcacctaaattgcggcctttg 28010272  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 874013 - 873982
Alignment:
Q  80 catcatcacagcctcattcgttttaattcaat 111  Q
    ||||||||||||||||||||||||||||||||    
T  874013 catcatcacagcctcattcgttttaattcaat 873982  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 13843588 - 13843643
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctt 190  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||||| ||||    
T  13843588 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctt 13843643  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 38131658 - 38131715
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| | |||||||||||||||||||||| || | |||||||| ||||||||    
T  38131658 tgttggaaattctgcctttattgcggtccgcccctagtcgtctaaattgtggcctttg 38131715  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 30539124 - 30539183
Alignment:
Q  134 actgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||| |||||||    
T  30539124 actgttggaaattccgcctttattgcggtccgcccctagtcgcctaaattgcagcctttg 30539183  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 1408902 - 1408959
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccc-tgtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||| ||||||||||||||| ||| |||||||||||| ||||||    
T  1408902 tgttggaaattccgccttaattgcggtccgccccttgtcgcctaaattgcgacctttg 1408959  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 12134696 - 12134639
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| |||||||||||  ||||||||||| ||  ||||||||||||||||||    
T  12134696 tgttggaaattccgcctttattctggtccgcccctagtcacctaaattgcggcctttg 12134639  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 24055322 - 24055265
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| | ||||| |||||||||||||||| || |||||||||||| ||||||    
T  24055322 tgttggaaattctgccttaattgcggtccgcccctagtcgcctaaattgcgccctttg 24055265  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 3184116 - 3184059
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    ||||| |||| |||||||||||||||||||||||| || |||||||||||||||||||    
T  3184116 tgttgtaaattccgcctttattgcggtccgcccctagtcgcctaaattgcggcctttg 3184059  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 23028041 - 23027984
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||||||||||||| |||||| ||  ||||||||||||||||||    
T  23028041 tgttggaaattccgcctttattgcggtctgcccctagtcacctaaattgcggcctttg 23027984  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 31766892 - 31766949
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||| |||||||||||||||| ||  ||||||||||||||||||    
T  31766892 tgttggaaattccgccttcattgcggtccgcccctagtcacctaaattgcggcctttg 31766949  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 32931297 - 32931354
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||||| ||||||    
T  32931297 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttg 32931354  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 21653217 - 21653267
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcg 185  Q
    |||||||||| ||||||| |||||||||||||||| || ||||||||||||    
T  21653217 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcg 21653267  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 18905747 - 18905804
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||| |||||||||||||||| || |||||| ||||| ||||||    
T  18905747 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaatttgcgacctttg 18905804  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 36997057 - 36997114
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||| | ||||||    
T  36997057 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgtgacctttg 36997114  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 22277415 - 22277471
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggccttt 191  Q
    ||||| |||| ||| |||||||||||||||||||| || ||||||||||| ||||||    
T  22277415 tgttgaaaattccgtctttattgcggtccgcccctagtcgcctaaattgcagccttt 22277471  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 40754346 - 40754390
Alignment:
Q  147 ccgcctttattgcggtccgcccct-gtggcctaaattgcggcctt 190  Q
    |||||||||||||||||||||||| || |||||||||| ||||||    
T  40754346 ccgcctttattgcggtccgcccctagtcgcctaaattggggcctt 40754390  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 48843230 - 48843173
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||    
T  48843230 tgttggaaattccgcctttattgcggtccacccctagtcgcctaaattgcggcctttg 48843173  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 51469377 - 51469427
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcg 185  Q
    |||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  51469377 tgttggaaattccgcctttattgcggtccgcccctagtcgcctaaattgcg 51469427  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 990732 - 990789
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||||| ||||||    
T  990732 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttg 990789  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 53738421 - 53738364
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||| ||| |||||||||||||||||| ||||| || |||||||||||||||||||    
T  53738421 tgttggtaattccgcctttattgcggtccacccctagtcgcctaaattgcggcctttg 53738364  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 45427468 - 45427410
Alignment:
Q  133 tactgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctt 190  Q
    ||||||||||||| ||||||| | |||||||||||||| || |||||||||||| ||||    
T  45427468 tactgttggaaattccgccttaactgcggtccgcccctagtcgcctaaattgcgacctt 45427410  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 15665043 - 15665100
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccg-cccctgtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||| ||||||||||| |||| || |||||||||||| ||||||    
T  15665043 tgttggaaattccgccttaattgcggtccgcccccagtcgcctaaattgcgacctttg 15665100  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 29669575 - 29669518
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||| |||||||||||||||| || |||| |||||| |||||||    
T  29669575 tgttggaaattccgccttaattgcggtccgcccctagtcgccttaattgctgcctttg 29669518  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 29734452 - 29734509
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||| |||| ||||||||||| || |||||||||||| ||||||    
T  29734452 tgttggaaattccgccttaattgtggtccgcccctagtcgcctaaattgcgacctttg 29734509  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 52214506 - 52214563
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||| | ||||||    
T  52214506 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgagacctttg 52214563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 13254295 - 13254351
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggccttt 191  Q
    |||||||||| ||||||||||||||||| |||||| || ||||||| ||| ||||||    
T  13254295 tgttggaaattccgcctttattgcggtctgcccctagtcgcctaaactgcagccttt 13254351  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 53740073 - 53740121
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattg 183  Q
    |||||||||| ||||||| |||||||||||||||| || ||||||||||    
T  53740073 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattg 53740121  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 24860273 - 24860216
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| | |||||||||||||||||||||| || |||||||||||||||||||    
T  24860273 tgttggaaattctgcctttattgcggtccgcccctagttgcctaaattgcggcctttg 24860216  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 54368928 - 54368987
Alignment:
Q  134 actgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||||| ||||||| |||||||||||||||| || |||||||||||| ||||||    
T  54368928 actgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttg 54368987  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 27219219 - 27219277
Alignment:
Q  135 ctgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    ||||||||||| ||||||| |||||||||||||||| || |||||||||||| ||||||    
T  27219219 ctgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttg 27219277  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 45443171 - 45443228
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||||| ||||||    
T  45443171 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttg 45443228  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 4255401 - 4255458
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||| | ||||||    
T  4255401 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgggacctttg 4255458  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 25441587 - 25441644
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| || ||||||||||||||||||||| || |||||||||||||||||||    
T  25441587 tgttggaaattccacctttattgcggtccgcccctagtcgcctaaattgcggcctttg 25441644  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 10849704 - 10849647
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| |||||||||||||||||||||||| || |||| ||||||||| ||||    
T  10849704 tgttggaaattccgcctttattgcggtccgcccctagttgccttaattgcggcttttg 10849647  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 43169133 - 43169188
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctt 190  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||||| ||||    
T  43169133 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctt 43169188  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 43195675 - 43195730
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctt 190  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||||| ||||    
T  43195675 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctt 43195730  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 21214415 - 21214357
Alignment:
Q  135 ctgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    ||||||||||| ||||||| |||||||||||||||| || |||||||||| | ||||||    
T  21214415 ctgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgtgacctttg 21214357  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 3977216 - 3977167
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgc 184  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||||    
T  3977216 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgc 3977167  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 4022338 - 4022281
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccc-tgtggcctaaattgcggcctttg 192  Q
    ||||||||||  |||||||||||||||||||||| ||| |||||||||||||||||||    
T  4022338 tgttggaaatttcgcctttattgcggtccgccccttgtcgcctaaattgcggcctttg 4022281  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 45264554 - 45264611
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccc-tgtggcctaaattgcggcctttg 192  Q
    |||||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||    
T  45264554 tgttggaaattctgcctttattgcggtccgccccttgtcgcctaaattgcggcctttg 45264611  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 35926435 - 35926377
Alignment:
Q  135 ctgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    ||||||||||| ||||||| |||||||||||||||| || |||||||||||| ||||||    
T  35926435 ctgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttg 35926377  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 8520450 - 8520391
Alignment:
Q  134 actgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||||| |||| || |||||||||||||||| || |||||||||||| ||||||    
T  8520450 actgttggaaattccgctttaattgcggtccgcccctagtcgcctaaattgcgacctttg 8520391  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 33879993 - 33879934
Alignment:
Q  134 actgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||||| |||||||||||||||||| ||||| ||  ||||||||||| ||||||    
T  33879993 actgttggaaataccgcctttattgcggtccacccctagtcacctaaattgcgacctttg 33879934  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 33964262 - 33964321
Alignment:
Q  134 actgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||||| |||||||||||||||||| ||||| ||  ||||||||||| ||||||    
T  33964262 actgttggaaataccgcctttattgcggtccacccctagtcacctaaattgcgacctttg 33964321  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 2697544 - 2697487
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| |||||||||||||||||| ||| | || |||||||||| ||||||||    
T  2697544 tgttggaaattccgcctttattgcggtccacccttagtcgcctaaattgaggcctttg 2697487  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 43423191 - 43423247
Alignment:
Q  134 actgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcct 189  Q
    |||||||||||| ||||||||||||  |||||||||| || ||||||||||| ||||    
T  43423191 actgttggaaattccgcctttattgttgtccgcccctagtcgcctaaattgcagcct 43423247  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 257481 - 257423
Alignment:
Q  135 ctgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    ||||||||||| ||||||| |||||||||||||||| || |||||||||||| ||||||    
T  257481 ctgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttg 257423  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 1663817 - 1663760
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||| |||||||||||||||| || |||| ||||||||||||||    
T  1663817 tgttggaaattccgccttaattgcggtccgcccctagttgccttaattgcggcctttg 1663760  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 28909923 - 28909980
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| |||||||||||| ||||||||||| || |||||||||||| ||||||    
T  28909923 tgttggaaattccgcctttattgtggtccgcccctagtcgcctaaattgcgccctttg 28909980  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 43168106 - 43168049
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctttg 192  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||||| ||||||    
T  43168106 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttg 43168049  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 29780352 - 29780402
Alignment:
Q  138 ttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggc 187  Q
    |||||||| || ||||||||||||||||||||| || ||||||||||||||    
T  29780352 ttggaaattccacctttattgcggtccgcccctagtcgcctaaattgcggc 29780402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 40121831 - 40121782
Alignment:
Q  136 tgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgc 184  Q
    |||||||||| ||||||| |||||||||||||||| || |||||||||||    
T  40121831 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgc 40121782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 40122140 - 40122084
Alignment:
Q  135 ctgttggaaatcccgcctttattgcggtccgcccct-gtggcctaaattgcggcctt 190  Q
    ||||||||||| ||||||| |||||||||| ||||| || |||||||||||| ||||    
T  40122140 ctgttggaaattccgccttaattgcggtccacccctagtcgcctaaattgcgacctt 40122084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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