View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0774_low_4 (Length: 519)

Name: NF0774_low_4
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0774_low_4
NF0774_low_4
[»] chr2 (2 HSPs)
chr2 (30-338)||(22828224-22828550)
chr2 (343-437)||(22828681-22828775)
[»] chr1 (2 HSPs)
chr1 (30-292)||(23307326-23307609)
chr1 (100-152)||(29684966-29685018)
[»] chr3 (3 HSPs)
chr3 (34-318)||(379973-380278)
chr3 (30-314)||(3555635-3555940)
chr3 (274-318)||(19244957-19245001)
[»] chr7 (4 HSPs)
chr7 (70-151)||(20919002-20919083)
chr7 (165-205)||(15560921-15560961)
chr7 (100-152)||(19053227-19053279)
chr7 (100-152)||(25717949-25718001)
[»] scaffold0042 (3 HSPs)
scaffold0042 (70-151)||(7145-7226)
scaffold0042 (70-151)||(14557-14638)
scaffold0042 (165-205)||(9009-9049)
[»] scaffold0005 (1 HSPs)
scaffold0005 (165-205)||(38347-38387)
[»] chr8 (1 HSPs)
chr8 (213-264)||(17279382-17279434)
[»] chr4 (1 HSPs)
chr4 (165-205)||(14801340-14801380)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 7e-72; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 30 - 338
Target Start/End: Original strand, 22828224 - 22828550
Alignment:
Q  30 tcagcacaaaacccatatcagtccctttactgcaaactctcctccagacctcaatactgaacctaaaattatgaaaccggtaccaaaatgtcgggcattt 129  Q
    ||||||||||||||||||||||| | ||||| |||||||  || ||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||    
T  22828224 tcagcacaaaacccatatcagtcgccttacttcaaactccacttcagacctcaataccgaacctaaaatcatgaaaccggtacgaaaatgtcgggaattt 22828323  T
Q  130 cgttagctaaccatagcaacaaagttcactt----atttg-------agagttcttaccattttagtgaagtcctgtcccaaaaccctg-------tccc 211  Q
     |||||||||||||||||| |||||||||||    | ||        |||||| ||||| |||||||||||  ||||||||||||||         | ||    
T  22828324 tgttagctaaccatagcaataaagttcactttccaagttacagagaaagagttattaccgttttagtgaagcgctgtcccaaaacccgtaaacaaattcc 22828423  T
Q  212 aacagaatctaccaacttcaaatgcgtttttcgaatccgtttcttacccgaatagtacaaagtttgtgtctaaactgaagggaattgaatgaggaatcta 311  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| || ||||||||||||||||||||||||||    
T  22828424 agcagaatctaccaacttcaaatgcgtttttcgaatccgtttctaacccgaatcatacaaagtttgtgtccaagctgaagggaattgaatgaggaatcta 22828523  T
Q  312 aaacttcggtaatgacttaatttcggt 338  Q
    ||||||| ||||| | |||||||||||    
T  22828524 aaacttcagtaatcaattaatttcggt 22828550  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 343 - 437
Target Start/End: Original strand, 22828681 - 22828775
Alignment:
Q  343 atagattataaccgtaaatcccaaatcaaatttgaatatgaactcacctaattttttgaacacataaactgatgagctttatgattctctgtgct 437  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  22828681 atagcttataatcgtaaatcccaaatcaaatttgaatatgaactcacctaatttgttgaacacataaactgatgagctttatgattctccgtgct 22828775  T

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Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 30 - 292
Target Start/End: Complemental strand, 23307609 - 23307326
Alignment:
Q  30 tcagcacaaaacccatatcagtccctttactgcaaactctcctccagacctcaatactgaacctaaaattatgaaaccggtaccaaaatgtcgggcattt 129  Q
    |||||||||||| | |||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23307609 tcagcacaaaactcgtatcagtccccttacttcaaactctcctccaggcctcaatactgaacctaaaatcatgaaaccggtaccaaaatgtcgggcattt 23307510  T
Q  130 cgttagctaaccatagcaacaaagttcac-ttattt-------------gagagttcttaccattttagtgaagtcctgtcccaaaaccc-------tgt 208  Q
    |||||||||||||||| |||||||||||| | ||||             ||||||||||||| ||||||||||| |||||||||||||||         |    
T  23307509 cgttagctaaccatagaaacaaagttcacatgatttgaagtaacagggagagagttcttaccgttttagtgaagccctgtcccaaaacccgtaaacaaat 23307410  T
Q  209 cccaacagaatctaccaacttcaaatgcgtttttcgaatccgtttcttacccgaatagtacaaagtttgtgtctaaactgaagg 292  Q
     ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||  ||||||||||||||| ||||||||||    
T  23307409 tccagcagaatctaccaacttcaaatgcgtttttcgaatccgtatctaacccgaatcatacaaagtttgtgtccaaactgaagg 23307326  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 29685018 - 29684966
Alignment:
Q  100 atgaaaccggtaccaaaatgtcgggcatttcgttagctaaccatagcaacaaa 152  Q
    ||||||| |||||||||| ||| || ||||||||| |||||||||||| ||||    
T  29685018 atgaaactggtaccaaaacgtccggaatttcgttatctaaccatagcatcaaa 29684966  T

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Target: chr3 (Bit Score: 128; Significance: 6e-66; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 34 - 318
Target Start/End: Complemental strand, 380278 - 379973
Alignment:
Q  34 cacaaaacccatatcagtccctttactgcaaactctcctccagacctcaatactgaacctaaaattatgaaaccggtaccaaaatgtcgggcatttcgtt 133  Q
    ||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  380278 cacaaaacccatatcagtccccttacttcaaactctcctccaggcctcaatgctgaacctaaaatcatgaaaccgataccaaaatgtcgggaatttcgtt 380179  T
Q  134 agctaaccatagcaacaaagttcac-ttattt-------------gagagttcttaccattttagtgaagtcctgtcccaaaaccc-------tgtccca 212  Q
    ||||||||||||||||||||||||| | ||||             ||||||||||||| |||| |||||| |||||||||||||||         | |||    
T  380178 agctaaccatagcaacaaagttcacgtgatttgaagttacagcaagagagttcttaccgttttggtgaagccctgtcccaaaacccctaaccaaattcca 380079  T
Q  213 acagaatctaccaacttcaaatgcgtttttcgaatccgtttcttacccgaatagtacaaagtttgtgtctaaactgaagggaattgaatgaggaatctaa 312  Q
     |||||| ||||||||||||||||||||| |||||||||||||  ||| |||  ||||||||||||||  ||||||||||||||||||||||||||||||    
T  380078 gcagaatttaccaacttcaaatgcgttttccgaatccgtttctagcccaaatcatacaaagtttgtgttcaaactgaagggaattgaatgaggaatctaa 379979  T
Q  313 aacttc 318  Q
    | ||||    
T  379978 accttc 379973  T

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Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 30 - 314
Target Start/End: Complemental strand, 3555940 - 3555635
Alignment:
Q  30 tcagcacaaaacccatatcagtccctttactgcaaactctcctccagacctcaatactgaacctaaaattatgaaaccggtaccaaaatgtcgggcattt 129  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  3555940 tcagcacaaaacccatatcagtccccttacttcaaactctcctccaggcctcaatacggaacctaaaatcatgaaaccggtatcaaaatgtcgggcattt 3555841  T
Q  130 cgttagctaaccatagcaacaaagttca-cttattt-------------gagagttcttaccattttagtgaagtcctgtcccaaaaccc-------tgt 208  Q
    |||| ||||||||||||||||||||||| || ||||             |||||||||| || |||||| |||| |||||||||||||||         |    
T  3555840 cgttggctaaccatagcaacaaagttcacctgatttgaagttacagggagagagttcttcccgttttagcgaagccctgtcccaaaacccgtaaacaaat 3555741  T
Q  209 cccaacagaatctaccaacttcaaatgcgtttttcgaatccgtttcttacccgaatagtacaaagtttgtgtctaaactgaagggaattgaatgaggaat 308  Q
     ||| || ||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||||||||| |||| |||||||||||||||||||||    
T  3555740 tccagcataatctaccagcttcaaatgcgtttttcgaatctgtttctaacccgaatcatacaaagtttgtgtccaaacggaagggaattgaatgaggaat 3555641  T
Q  309 ctaaaa 314  Q
    | ||||    
T  3555640 ccaaaa 3555635  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 19244957 - 19245001
Alignment:
Q  274 tttgtgtctaaactgaagggaattgaatgaggaatctaaaacttc 318  Q
    |||||||| |||||| |||||||||||||  ||||||||||||||    
T  19244957 tttgtgtccaaactgtagggaattgaatggagaatctaaaacttc 19245001  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 20919083 - 20919002
Alignment:
Q  70 cctccagacctcaatactgaacctaaaattatgaaaccggtaccaaaatgtcgggcatttcgttagctaaccatagcaacaa 151  Q
    |||||||| || ||||||||||| ||| | ||||||| |||||||||||||||   ||||||||||||| | ||||||||||    
T  20919083 cctccagaacttaatactgaaccaaaactcatgaaactggtaccaaaatgtcgaaaatttcgttagctatcaatagcaacaa 20919002  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 15560961 - 15560921
Alignment:
Q  165 gagagttcttaccattttagtgaagtcctgtcccaaaaccc 205  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  15560961 gagagttcttaccattttagtgaagccctgtcccaaaaccc 15560921  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 19053279 - 19053227
Alignment:
Q  100 atgaaaccggtaccaaaatgtcgggcatttcgttagctaaccatagcaacaaa 152  Q
    ||||||| |||||||||| |||  | |||||||||||||||||||||| ||||    
T  19053279 atgaaactggtaccaaaacgtccagaatttcgttagctaaccatagcatcaaa 19053227  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 25718001 - 25717949
Alignment:
Q  100 atgaaaccggtaccaaaatgtcgggcatttcgttagctaaccatagcaacaaa 152  Q
    ||||||| ||||| |||| ||| || |||||||||||||||||||||| ||||    
T  25718001 atgaaactggtacgaaaacgtccggaatttcgttagctaaccatagcatcaaa 25717949  T

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Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 7226 - 7145
Alignment:
Q  70 cctccagacctcaatactgaacctaaaattatgaaaccggtaccaaaatgtcgggcatttcgttagctaaccatagcaacaa 151  Q
    ||||||||||||||||||  ||| ||| | ||||||||||| |||||  | |||  |||||||||||||||||||| |||||    
T  7226 cctccagacctcaatacttgaccaaaattcatgaaaccggtgccaaagcgacggaaatttcgttagctaaccatagaaacaa 7145  T

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Target: scaffold0042; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 14638 - 14557
Alignment:
Q  70 cctccagacctcaatactgaacctaaaattatgaaaccggtaccaaaatgtcgggcatttcgttagctaaccatagcaacaa 151  Q
    ||||||||||||||||||  ||| ||| | ||||||||||| |||||  | |||  |||||||||||||||||||| |||||    
T  14638 cctccagacctcaatacttgaccaaaattcatgaaaccggtgccaaagcgacggaaatttcgttagctaaccatagaaacaa 14557  T

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Target: scaffold0042; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 9049 - 9009
Alignment:
Q  165 gagagttcttaccattttagtgaagtcctgtcccaaaaccc 205  Q
    |||||||||||||||||||| |||| || ||||||||||||    
T  9049 gagagttcttaccattttagcgaagcccagtcccaaaaccc 9009  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 38347 - 38387
Alignment:
Q  165 gagagttcttaccattttagtgaagtcctgtcccaaaaccc 205  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  38347 gagagttcttaccattttagtggagccctgtcccaaaaccc 38387  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 17279382 - 17279434
Alignment:
Q  213 acagaatctaccaa-cttcaaatgcgtttttcgaatccgtttcttacccgaat 264  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  17279382 acagaatttaccaaacttcaaatgcgtttttcgaatccgtttctaatccgaat 17279434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 14801380 - 14801340
Alignment:
Q  165 gagagttcttaccattttagtgaagtcctgtcccaaaaccc 205  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  14801380 gagagttcttaccattttagtggagccctgtcccaaaaccc 14801340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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