View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0774_low_41 (Length: 251)
Name: NF0774_low_41
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0774_low_41 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 32372321 - 32372099
Alignment:
| Q |
29 |
actcgtaacagtccacggtcatggataataaaaaatgacttaaaaacaccggtaaatggcacatatacataatataacaccagttaacaaaaaagtaatt |
128 |
Q |
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| T |
32372321 |
actcgtaagagtacacggtcatggataataaaaaatgacttaaaaacaccggtaaatggcacatatacataatataaccccagttaacaaaaaagtaatt |
32372222 |
T |
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| Q |
129 |
caacatttcaaagagcaaaacaagagcatcacacagccagacaaaatagaaaagaggaacatatcagactggacaaagcattgcaaaccagacaaacgaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32372221 |
caacatttcaaagagcaaaacaagagcatcacacagccaggcaaaatagaaaagaggaacacatcagactggacaaagcattgcaaaccagacaaacgaa |
32372122 |
T |
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| Q |
229 |
aaaagagaagaggaccacaaacc |
251 |
Q |
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||||||||||||||||||||||| |
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| T |
32372121 |
aaaagagaagaggaccacaaacc |
32372099 |
T |
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