View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0774_low_42 (Length: 251)
Name: NF0774_low_42
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0774_low_42 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 24566853 - 24567083
Alignment:
| Q |
20 |
tcgacaattgtgttaaaggttattgccaaggttcaatttataagagtacatattgaatggacagattgaaaaatcttgttaaaaagatatttttaaccat |
119 |
Q |
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| T |
24566853 |
tcgacaattgtgttaa-ggttgttgcgaaggttcaatttataagagtacatattgaatggacagattgaaaaatcttgttaaaaagatatttttaaccat |
24566951 |
T |
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| Q |
120 |
catctatccatagtgacttgcactcagcattcttgactaaatgcatcttcctttatcggaactaaatcaatgattatagaacatggaagaaatctagtat |
219 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
24566952 |
catctatccatagtgacttgcacttagcattcttgactaaatgcatcttcctttatcggaactaaatcaatgatgatagaacatgggagaaatctagtat |
24567051 |
T |
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| Q |
220 |
tttatggaatgtctatgttattgctcaataat |
251 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
24567052 |
tttatggaatgtctatgttattgctcaataat |
24567083 |
T |
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