View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0774_low_43 (Length: 245)

Name: NF0774_low_43
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0774_low_43
NF0774_low_43
[»] chr6 (1 HSPs)
chr6 (1-161)||(9412414-9412571)
[»] chr1 (2 HSPs)
chr1 (30-89)||(7561332-7561391)
chr1 (28-88)||(7555512-7555572)
[»] chr3 (1 HSPs)
chr3 (37-84)||(51120325-51120372)
[»] chr7 (1 HSPs)
chr7 (42-79)||(10616209-10616246)
[»] chr4 (4 HSPs)
chr4 (37-86)||(554097-554146)
chr4 (41-82)||(566754-566795)
chr4 (36-88)||(642341-642393)
chr4 (33-85)||(1537245-1537297)
[»] chr2 (1 HSPs)
chr2 (35-84)||(45244521-45244570)
[»] chr5 (1 HSPs)
chr5 (39-79)||(41886296-41886336)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 9412414 - 9412571
Alignment:
Q  1 agagagacttcaagtcgcgatagttagcaccattgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatcagcatcggcagaaac 100  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||  |||    
T  9412414 agagagacttcaactcgcgatagttagcaccatcgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaat---catcggcaacaac 9412510  T
Q  101 aaccgttgttgtttttcgtcttcttttttgttgatgactgaactgcatagctgtgtctctg 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  9412511 aaccgttgttgtttttcgtcttcttttttgttgatgactgaactgcatggctgtgtttctg 9412571  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 7561332 - 7561391
Alignment:
Q  30 ccattgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatcagca 89  Q
    |||||||||||||| ||||||| |  || |||||| ||||||||||||||||||||||||    
T  7561332 ccattgttgaggaacttgaagacatgtttccaacagtcatcaggtaaataaaaatcagca 7561391  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 7555512 - 7555572
Alignment:
Q  28 caccattgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatcagc 88  Q
    |||| |||||||| |||||||||| |  || |||||||||||| |||||||||||| ||||    
T  7555512 caccgttgttgagaaatttgaagacaagttgccaacattcatcgggtaaataaaaagcagc 7555572  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 51120372 - 51120325
Alignment:
Q  37 tgaggaatttgaagatactttcccaacattcatcaggtaaataaaaat 84  Q
    ||||||||||||||| || ||||||||| |||||||||||||| ||||    
T  51120372 tgaggaatttgaagacacattcccaacagtcatcaggtaaatagaaat 51120325  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 10616209 - 10616246
Alignment:
Q  42 aatttgaagatactttcccaacattcatcaggtaaata 79  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaata 10616246  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 554097 - 554146
Alignment:
Q  37 tgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatca 86  Q
    ||||||||||||||| |  |||||||||||||||||| || |||||||||    
T  554097 tgaggaatttgaagacaaattcccaacattcatcaggaaagtaaaaatca 554146  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 566754 - 566795
Alignment:
Q  41 gaatttgaagatactttcccaacattcatcaggtaaataaaa 82  Q
    ||||||||||| || ||||||||| |||||||||||||||||    
T  566754 gaatttgaagacacgttcccaacagtcatcaggtaaataaaa 566795  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 642341 - 642393
Alignment:
Q  36 ttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatcagc 88  Q
    ||||| || |||||||| |  |||||||||||||||||||||||||| |||||    
T  642341 ttgagaaaattgaagatgcactcccaacattcatcaggtaaataaaactcagc 642393  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 1537297 - 1537245
Alignment:
Q  33 ttgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatc 85  Q
    |||||||||||| |||| | || ||||||||| |||||||||||||| |||||    
T  1537297 ttgttgaggaatctgaatacacattcccaacactcatcaggtaaatataaatc 1537245  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 45244570 - 45244521
Alignment:
Q  35 gttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaat 84  Q
    |||||||||||| |||| || ||||||||| |||||||||||||| ||||    
T  45244570 gttgaggaatttcaagacacattcccaacactcatcaggtaaatagaaat 45244521  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 41886336 - 41886296
Alignment:
Q  39 aggaatttgaagatactttcccaacattcatcaggtaaata 79  Q
    ||||||||||||| || ||||||||| ||||||||||||||    
T  41886336 aggaatttgaagacacattcccaacactcatcaggtaaata 41886296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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