View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0774_low_46 (Length: 220)

Name: NF0774_low_46
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0774_low_46
NF0774_low_46
[»] chr6 (9 HSPs)
chr6 (1-142)||(27181099-27181237)
chr6 (1-142)||(27268002-27268140)
chr6 (16-142)||(27352785-27352912)
chr6 (16-142)||(27364898-27365025)
chr6 (16-142)||(27455242-27455369)
chr6 (1-141)||(24297019-24297161)
chr6 (1-141)||(24311050-24311192)
chr6 (93-131)||(30722476-30722514)
chr6 (94-131)||(17093007-17093044)
[»] chr3 (12 HSPs)
chr3 (1-142)||(31027308-31027450)
chr3 (1-142)||(31037729-31037871)
chr3 (16-142)||(32289142-32289270)
chr3 (16-142)||(32299429-32299557)
chr3 (1-81)||(4443727-4443806)
chr3 (94-131)||(16065294-16065331)
chr3 (93-131)||(19703195-19703233)
chr3 (91-131)||(37186524-37186564)
chr3 (91-131)||(15732466-15732507)
chr3 (91-131)||(15747551-15747592)
chr3 (91-131)||(15884010-15884051)
chr3 (91-131)||(15899189-15899230)
[»] chr2 (9 HSPs)
chr2 (1-142)||(31865263-31865405)
chr2 (1-142)||(31895455-31895597)
chr2 (1-81)||(34265361-34265441)
chr2 (1-81)||(34308178-34308258)
chr2 (94-131)||(26622082-26622119)
chr2 (91-131)||(13063405-13063445)
chr2 (16-51)||(21694749-21694784)
chr2 (16-51)||(21709479-21709514)
chr2 (91-131)||(20846774-20846815)
[»] chr4 (3 HSPs)
chr4 (16-142)||(24464935-24465062)
chr4 (93-131)||(1641448-1641486)
chr4 (93-131)||(26140646-26140684)
[»] scaffold1901 (1 HSPs)
scaffold1901 (19-142)||(656-779)
[»] scaffold0418 (1 HSPs)
scaffold0418 (19-142)||(3522-3645)
[»] chr5 (9 HSPs)
chr5 (1-141)||(33286458-33286599)
chr5 (1-141)||(33301508-33301649)
chr5 (91-131)||(30914661-30914701)
chr5 (93-131)||(27290909-27290947)
chr5 (91-131)||(18063365-18063405)
chr5 (16-51)||(25193679-25193714)
chr5 (14-51)||(25209064-25209101)
chr5 (14-51)||(25273220-25273257)
chr5 (94-131)||(34498728-34498765)
[»] chr8 (5 HSPs)
chr8 (1-124)||(5518147-5518272)
chr8 (1-81)||(19696799-19696879)
chr8 (94-131)||(29035187-29035224)
chr8 (94-131)||(22141733-22141770)
chr8 (91-131)||(15208712-15208753)
[»] chr7 (6 HSPs)
chr7 (91-131)||(14227155-14227195)
chr7 (91-131)||(48216270-48216310)
chr7 (91-131)||(13550705-13550745)
chr7 (94-131)||(39149206-39149243)
chr7 (16-51)||(16035159-16035194)
chr7 (16-51)||(16049934-16049969)
[»] scaffold0260 (1 HSPs)
scaffold0260 (91-131)||(12976-13016)
[»] scaffold1658 (1 HSPs)
scaffold1658 (90-131)||(727-768)
[»] scaffold0347 (1 HSPs)
scaffold0347 (16-51)||(18124-18159)
[»] chr1 (2 HSPs)
chr1 (48-81)||(13482918-13482951)
chr1 (91-131)||(21479864-21479905)


Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 27181099 - 27181237
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngggtgattctca 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||       ||||||||||||    
T  27181099 aaacagaaaaatcatagaaaatcatcaagaacattcacataaaccctaactgaaa---atcacagattcatcaaattcatctttttttgggtgattctca 27181195  T
Q  101 gagattctttgcgaatcttcatcatcgaatcgtctctgctcc 142  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27181196 gagattctttgcgaatcttcatcatcgaatcgtctctgctcc 27181237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 27268140 - 27268002
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngggtgattctca 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||       ||||||||||||    
T  27268140 aaacagaaaaatcatagaaaatcatcaagaacattcacataaaccctaactgaaa---atcacagattcatcaaattcatctttttttgggtgattctca 27268044  T
Q  101 gagattctttgcgaatcttcatcatcgaatcgtctctgctcc 142  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27268043 gagattctttgcgaatcttcatcatcgaatcgtctctgctcc 27268002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 27352912 - 27352785
Alignment:
Q  16 agaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcat-cnnnnnnngggtgattctcagagattctttgcga 114  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||    
T  27352912 agaaaatcatcaagaacacacacataaaccctaaccgaaaatcatcacagattcatcaaattcatcctttttttgggtgattctcagagattctttgcga 27352813  T
Q  115 atcttcatcatcgaatcgtctctgctcc 142  Q
    |||||||||||||||||| |||||||||    
T  27352812 atcttcatcatcgaatcgcctctgctcc 27352785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 27365025 - 27364898
Alignment:
Q  16 agaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcat-cnnnnnnngggtgattctcagagattctttgcga 114  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||    
T  27365025 agaaaatcatcaagaacacacacataaaccctaaccgaaaatcatcacagattcatcaaattcatcctttttttgggtgattctcagagattctttgcga 27364926  T
Q  115 atcttcatcatcgaatcgtctctgctcc 142  Q
    |||||||||||||||||| |||||||||    
T  27364925 atcttcatcatcgaatcgcctctgctcc 27364898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 27455369 - 27455242
Alignment:
Q  16 agaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcat-cnnnnnnngggtgattctcagagattctttgcga 114  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||    
T  27455369 agaaaatcatcaagaacacacacataaaccctaaccgaaaatcatcacagattcatcaaattcatcctttttttgggtgattctcagagattctttgcga 27455270  T
Q  115 atcttcatcatcgaatcgtctctgctcc 142  Q
    |||||||||||||||||| |||||||||    
T  27455269 atcttcatcatcgaatcgcctctgctcc 27455242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 24297161 - 24297019
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngggt--gattct 98  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||         ||  ||||||    
T  24297161 aaacagaaaaatcatagaaaatcatcaagaatattcacataaaccctaaccgaaaatcatcacaaattcatcaaattcatccttctttttgtacgattct 24297062  T
Q  99 cagagattctttgcgaatcttcatcatcgaatcgtctctgctc 141  Q
    ||||||||||| ||||||||||||||  ||| ||| |||||||    
T  24297061 cagagattcttcgcgaatcttcatcactgaaccgtttctgctc 24297019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 24311192 - 24311050
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngggt--gattct 98  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||         ||  ||||||    
T  24311192 aaacagaaaaatcatagaaaatcatcaagaatattcacataaaccctaaccgaaaatcatcacaaattcatcaaattcatccttctttttgtacgattct 24311093  T
Q  99 cagagattctttgcgaatcttcatcatcgaatcgtctctgctc 141  Q
    ||||||||||| ||||||||||||||  ||| ||| |||||||    
T  24311092 cagagattcttcgcgaatcttcatcactgaaccgtttctgctc 24311050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 30722514 - 30722476
Alignment:
Q  93 gattctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30722514 gattctcagagattctttgcgaatcttcatcatcgaatc 30722476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 17093044 - 17093007
Alignment:
Q  94 attctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17093044 attctcagagattctttgcgaatcttcatcatcgaatc 17093007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 31027450 - 31027308
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatc-nnnnnnngggtgattctc 99  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        | |||||||||    
T  31027450 aaacagaaaaatcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacaaattcatcaaattcatcatccttttgtgtgattctc 31027351  T
Q  100 agagattctttgcgaatcttcatcatcgaatcgtctctgctcc 142  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31027350 agagattctttgcgaatcttcatcatcgaatcgtctctgctcc 31027308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 31037871 - 31037729
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatc-nnnnnnngggtgattctc 99  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||        | |||||||||    
T  31037871 aaacagaaaaatcatagaaaatcatcaagaacattcacataaatcctaactgaaaatcatcacaaattcatcaaattcatcatccttttgtgtgattctc 31037772  T
Q  100 agagattctttgcgaatcttcatcatcgaatcgtctctgctcc 142  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31037771 agagattctttgcgaatcttcatcatcgaatcgtctctgctcc 31037729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 32289142 - 32289270
Alignment:
Q  16 agaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcat--cnnnnnnngggtgattctcagagattctttgcg 113  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||  |        ||||||||||||||||||||||||    
T  32289142 agaaaatcatcaagaacacacacataaaccctaaccgaaaatcatcacagattcatcaaattcatcccttttttttggtgattctcagagattctttgcg 32289241  T
Q  114 aatcttcatcatcgaatcgtctctgctcc 142  Q
    ||||||||||||||||||| |||||||||    
T  32289242 aatcttcatcatcgaatcgcctctgctcc 32289270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 32299429 - 32299557
Alignment:
Q  16 agaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcat--cnnnnnnngggtgattctcagagattctttgcg 113  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||  |        ||||||||||||||||||||||||    
T  32299429 agaaaatcatcaagaacacacacataaaccctaaccgaaaatcatcacagattcatcaaattcatcccttttttttggtgattctcagagattctttgcg 32299528  T
Q  114 aatcttcatcatcgaatcgtctctgctcc 142  Q
    ||||||||||||||||||| |||||||||    
T  32299529 aatcttcatcatcgaatcgcctctgctcc 32299557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 4443727 - 4443806
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatc 81  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  4443727 aaacagaaaaatcatagaaaatcatcaagaatattcacataaaccctaaccg-aaatcatcacaaattcatcaaattcatc 4443806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 16065331 - 16065294
Alignment:
Q  94 attctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16065331 attctcagagattctttgcgaatcttcatcatcgaatc 16065294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 19703195 - 19703233
Alignment:
Q  93 gattctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  19703195 gattctcagagattctttgcgaaccttcatcatcgaatc 19703233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 37186564 - 37186524
Alignment:
Q  91 gtgattctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  37186564 gtgattctcagagattctgtgcgaatcttcatcgtcgaatc 37186524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 15732507 - 15732466
Alignment:
Q  91 gtgattctcagagattcttt-gcgaatcttcatcatcgaatc 131  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  15732507 gtgattctcagagattcttttgcgaatcgtcatcatcgaatc 15732466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  91 gtgattctcagagattcttt-gcgaatcttcatcatcgaatc 131  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  15747592 gtgattctcagagattcttttgcgaatcgtcatcatcgaatc 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 15884051 - 15884010
Alignment:
Q  91 gtgattctcagagattcttt-gcgaatcttcatcatcgaatc 131  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  15884051 gtgattctcagagattcttttgcgaatcatcatcatcgaatc 15884010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 15899230 - 15899189
Alignment:
Q  91 gtgattctcagagattcttt-gcgaatcttcatcatcgaatc 131  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  15899230 gtgattctcagagattcttttgcgaatcatcatcatcgaatc 15899189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 8e-51; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 31865405 - 31865263
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatc-nnnnnnngggtgattctc 99  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        | |||||||||    
T  31865405 aaacagaaaaatcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacaaattcatcaaattcatcatccttttgtgtgattctc 31865306  T
Q  100 agagattctttgcgaatcttcatcatcgaatcgtctctgctcc 142  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31865305 agagattctttgcgaatcttcatcatcgaatcgtctctgctcc 31865263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 31895597 - 31895455
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatc-nnnnnnngggtgattctc 99  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        | |||||||||    
T  31895597 aaacagaaaaatcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacaaattcatcaaattcatcttccttttgtgtgattctc 31895498  T
Q  100 agagattctttgcgaatcttcatcatcgaatcgtctctgctcc 142  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31895497 agagattctttgcgaatcttcatcatcgaatcgtctctgctcc 31895455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 34265441 - 34265361
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatc 81  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  34265441 aaacagaaaaatcatagaaaatcatcaagaatattcacataaaccctaaccaaaaatcatcacaaattcatcaaattcatc 34265361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 34308258 - 34308178
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatc 81  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  34308258 aaacagaaaaatcatagaaaatcatcaagaatattcacataaaccctaaccaaaaatcatcacaaattcatcaaattcatc 34308178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 26622119 - 26622082
Alignment:
Q  94 attctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26622119 attctcagagattctttgcgaatcttcatcatcgaatc 26622082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 13063405 - 13063445
Alignment:
Q  91 gtgattctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  13063405 gtgattctcagagattctgtgcgaatcatcatcatcgaatc 13063445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 21694784 - 21694749
Alignment:
Q  16 agaaaatcatcaagaacattcacataaaccctaact 51  Q
    |||||||||||||||||||||||| |||||||||||    
T  21694784 agaaaatcatcaagaacattcacaaaaaccctaact 21694749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 21709514 - 21709479
Alignment:
Q  16 agaaaatcatcaagaacattcacataaaccctaact 51  Q
    |||||||||||||||||||||||| |||||||||||    
T  21709514 agaaaatcatcaagaacattcacaaaaaccctaact 21709479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 20846774 - 20846815
Alignment:
Q  91 gtgattctcagagattc-tttgcgaatcttcatcatcgaatc 131  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  20846774 gtgattctcagagattcttttgcgaatcntcatcatcgaatc 20846815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 24465062 - 24464935
Alignment:
Q  16 agaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcat-cnnnnnnngggtgattctcagagattctttgcga 114  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||    
T  24465062 agaaaatcatcaagaacacacacataaaccctaaccgaaaatcatcacagattcatcaaattcatcctttttttgggtgattctcagagattctttgcga 24464963  T
Q  115 atcttcatcatcgaatcgtctctgctcc 142  Q
    |||||||||||||||||| |||||||||    
T  24464962 atcttcatcatcgaatcgcctctgctcc 24464935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 1641448 - 1641486
Alignment:
Q  93 gattctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  1641448 gattatcagagattctttgcgaatcttcatcatcgaatc 1641486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 26140684 - 26140646
Alignment:
Q  93 gattctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  26140684 gattctcagagattctttgcgaaccttcatcatcgaatc 26140646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1901 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold1901
Description:

Target: scaffold1901; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 779 - 656
Alignment:
Q  19 aaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngg-gtgattctcagagattctttgcgaatc 117  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||        | |||||||||||||||||||||||||||    
T  779 aaatcatcaagaacattcacataaaccctaacc-aaaatcatcacaaattcatcaaattcatcatccttttgtgtgattctcagagattctttgcgaatc 681  T
Q  118 ttcatcatcgaatcgtctctgctcc 142  Q
    |||||||||||||||||||||||||    
T  680 ttcatcatcgaatcgtctctgctcc 656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 3645 - 3522
Alignment:
Q  19 aaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngg-gtgattctcagagattctttgcgaatc 117  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||        | |||||||||||||||||||||||||||    
T  3645 aaatcatcaagaacattcacataaaccctaacc-aaaatcatcacaaattcatcaaattcatcatccttttgtgtgattctcagagattctttgcgaatc 3547  T
Q  118 ttcatcatcgaatcgtctctgctcc 142  Q
    |||||||||||||||||||||||||    
T  3546 ttcatcatcgaatcgtctctgctcc 3522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 33286458 - 33286599
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngg-gtgattctc 99  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||       || | |||||||    
T  33286458 aaacagaaaaatcacagaaaatcatcaagaacattcacataaaccctaaccgaaaatcatcacaaattcatcaaattcatcattttttggtgcgattctc 33286557  T
Q  100 agagattctttgcgaatcttcatcatcgaatcgtctctgctc 141  Q
    |||||||||| | |||||||||||| |||| || ||||||||    
T  33286558 agagattcttcgtgaatcttcatcaccgaaccgcctctgctc 33286599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 33301508 - 33301649
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatcnnnnnnngg-gtgattctc 99  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||       || | |||||||    
T  33301508 aaacagaaaaatcacagaaaatcatcaagaacattcacataaaccctaaccgaaaatcatcacaaattcatcaaattcatcattttttggtgcgattctc 33301607  T
Q  100 agagattctttgcgaatcttcatcatcgaatcgtctctgctc 141  Q
    |||||||||| | |||||||||||| |||| || ||||||||    
T  33301608 agagattcttcgtgaatcttcatcaccgaaccgcctctgctc 33301649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 30914701 - 30914661
Alignment:
Q  91 gtgattctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30914701 gtgattctcagagattctttgcgaatcttcatcatcgaatc 30914661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 27290947 - 27290909
Alignment:
Q  93 gattctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  27290947 gattctcagagattctttgcgaaccttcatcatcgaatc 27290909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 18063405 - 18063365
Alignment:
Q  91 gtgattctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  18063405 gtgattctcagagattctgtgcgaatcatcatcatcgaatc 18063365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 25193679 - 25193714
Alignment:
Q  16 agaaaatcatcaagaacattcacataaaccctaact 51  Q
    |||||||||||||||||||||||| |||||||||||    
T  25193679 agaaaatcatcaagaacattcacaaaaaccctaact 25193714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 25209064 - 25209101
Alignment:
Q  14 atagaaaatcatcaagaacattcacataaaccctaact 51  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  25209064 atagaaagtcatcaagaacattcacaaaaaccctaact 25209101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 25273220 - 25273257
Alignment:
Q  14 atagaaaatcatcaagaacattcacataaaccctaact 51  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  25273220 atagaaagtcatcaagaacattcacaaaaaccctaact 25273257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 34498765 - 34498728
Alignment:
Q  94 attctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  34498765 attctcaaagattctttgcgaaccttcatcatcgaatc 34498728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 5518272 - 5518147
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatc--nnnnnnngggtgattct 98  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||         | | ||||||    
T  5518272 aaacagaaaaatcatagaaaatcatcaagaatattcacataaaccctaaccaaaaatcatcacaaattcatcaaattcatcattctttttgtgcgattct 5518173  T
Q  99 cagagattctttgcgaatcttcatca 124  Q
    ||||||||||| ||||||||||||||    
T  5518172 cagagattcttcgcgaatcttcatca 5518147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 19696799 - 19696879
Alignment:
Q  1 aaacagaaaagtcatagaaaatcatcaagaacattcacataaaccctaactgaaaatcatcacagattcatcaaattcatc 81  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  19696799 aaacagaaaaatcatagaaaatcatcaagaatattcacataaaccctaaccaaaaatcatcacaaattcatcaaattcatc 19696879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 29035187 - 29035224
Alignment:
Q  94 attctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29035187 attctcagagattctttgcgaatcttcatcatcgaatc 29035224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 22141733 - 22141770
Alignment:
Q  94 attctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  22141733 attctcaaagattctttgcgaatcttcatcatcgaatc 22141770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 15208712 - 15208753
Alignment:
Q  91 gtgattctcagagattc-tttgcgaatcttcatcatcgaatc 131  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  15208712 gtgattctcagagattcttttgcgaatcgtcatcatcgaatc 15208753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 14227195 - 14227155
Alignment:
Q  91 gtgattctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14227195 gtgattctcagagattctttgcgaatcttcatcatcgaatc 14227155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 48216270 - 48216310
Alignment:
Q  91 gtgattctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48216270 gtgattctcagagattctttgcgaatcttcatcatcgaatc 48216310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 13550745 - 13550705
Alignment:
Q  91 gtgattctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  13550745 gtgattctcagagattctttgcgaatcatcatcatcgaatc 13550705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 39149206 - 39149243
Alignment:
Q  94 attctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  39149206 attctcagagattctctgcgaatcttcatcatcgaatc 39149243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 16035159 - 16035194
Alignment:
Q  16 agaaaatcatcaagaacattcacataaaccctaact 51  Q
    |||||||||||||||||||||||| |||||||||||    
T  16035159 agaaaatcatcaagaacattcacaaaaaccctaact 16035194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 16049934 - 16049969
Alignment:
Q  16 agaaaatcatcaagaacattcacataaaccctaact 51  Q
    |||||||||||||||||||||||| |||||||||||    
T  16049934 agaaaatcatcaagaacattcacaaaaaccctaact 16049969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 13016 - 12976
Alignment:
Q  91 gtgattctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  13016 gtgattctcagagattcttcgcgaatcttcatcatcgaatc 12976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1658 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1658
Description:

Target: scaffold1658; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 727 - 768
Alignment:
Q  90 ggtgattctcagagattctttgcgaatcttcatcatcgaatc 131  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    
T  727 ggtgattctcagagattctttgcaaatcttcgtcatcgaatc 768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 18159 - 18124
Alignment:
Q  16 agaaaatcatcaagaacattcacataaaccctaact 51  Q
    |||||||||||||||||||||||| |||||||||||    
T  18159 agaaaatcatcaagaacattcacaaaaaccctaact 18124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 13482951 - 13482918
Alignment:
Q  48 aactgaaaatcatcacagattcatcaaattcatc 81  Q
    ||||||||||||||||| ||||||||||||||||    
T  13482951 aactgaaaatcatcacaaattcatcaaattcatc 13482918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 21479864 - 21479905
Alignment:
Q  91 gtgattctcagagattc-tttgcgaatcttcatcatcgaatc 131  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  21479864 gtgattctcagagattcttttgcgaatcatcatcatcgaatc 21479905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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