View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0774_low_5 (Length: 512)
Name: NF0774_low_5
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0774_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 82 - 485
Target Start/End: Complemental strand, 1567587 - 1567184
Alignment:
| Q |
82 |
cagtagagatgaattcccaattatcacggacaagcggtgcaaatactaaggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaac |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567587 |
cagtagagatgaattcccaattatcacggacaagcggtgcaaatactatggctgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaac |
1567488 |
T |
|
| Q |
182 |
ttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaat |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567487 |
ttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaat |
1567388 |
T |
|
| Q |
282 |
tgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaaga |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567387 |
tgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaaga |
1567288 |
T |
|
| Q |
382 |
tagccaatagcaagcatagtattgtcgagaccaccgcgacaatggaagttttaatcctacgccatgcgatgatggcagctttgcgcctactcttggcgac |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1567287 |
tagccaatagcaagcatagtattgtcgagaccaccgcgacaatggaagttttgttcctacgccatgcgatgatggcagctttgcgcctactcttggtgac |
1567188 |
T |
|
| Q |
482 |
gatg |
485 |
Q |
| |
|
|||| |
|
|
| T |
1567187 |
gatg |
1567184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 82 - 477
Target Start/End: Original strand, 1455758 - 1456153
Alignment:
| Q |
82 |
cagtagagatgaattcccaattatcacggacaagcggtgcaaatactaaggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaac |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1455758 |
cagtagagatgaattcccaattatcacggacaagcggtgcaaatactatggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaac |
1455857 |
T |
|
| Q |
182 |
ttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaat |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1455858 |
ttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaat |
1455957 |
T |
|
| Q |
282 |
tgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaaga |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1455958 |
tgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagcatagggaaga |
1456057 |
T |
|
| Q |
382 |
tagccaatagcaagcatagtattgtcgagaccaccgcgacaatggaagttttaatcctacgccatgcgatgatggcagctttgcgcctactcttgg |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
1456058 |
tagccaatagcaagcatagtattgtcgagaccacggcgacaatggaagttttgttcctacgccatgcggcgatgccagctttacgcctactcttgg |
1456153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 82 - 503
Target Start/End: Original strand, 1460867 - 1461288
Alignment:
| Q |
82 |
cagtagagatgaattcccaattatcacggacaagcggtgcaaatactaaggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaac |
181 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||||| ||||| ||| | ||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1460867 |
cagtagagatgacttcccaagtatcatggacaagcgatgcaattaccatggccgaaacgatcaaaatgatgctagcagcggtccatgagaaaaaaccaac |
1460966 |
T |
|
| Q |
182 |
ttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaat |
281 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |
|
|
| T |
1460967 |
ttctacgactgaaattgcatttgatagcaaaattatgaataagatcccaaagattctgttgtcaacagggctcattgaactaatatccgccagccttaat |
1461066 |
T |
|
| Q |
282 |
tgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaaga |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1461067 |
tgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatatttcgccataaagttacgaccatctgatgatatctttagtacagggaaga |
1461166 |
T |
|
| Q |
382 |
tagccaatagcaagcatagtattgtcgagaccaccgcgacaatggaagttttaatcctacgccatgcgatgatggcagctttgcgcctactcttggcgac |
481 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||| || |||||||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||| |
|
|
| T |
1461167 |
tagccaatagcaaacataatattgttgagaccacggcaacaatggaagttttgttcctacgccatgtgatgatgccagctttgcgcttactcttggcgac |
1461266 |
T |
|
| Q |
482 |
gatggaagttgtgtgcctatgc |
503 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1461267 |
gatggaagttgtgtgcctatgc |
1461288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 82 - 503
Target Start/End: Complemental strand, 1556095 - 1555677
Alignment:
| Q |
82 |
cagtagagatgaattcccaattatcacggacaagcggtgcaaatactaaggccgaagcgatcaaaatgatgctagcagcagtccatgagaaaaaaccaac |
181 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||||| ||||| ||| | ||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1556095 |
cagtagagatgacttcccaagtatcatggacaagcgatgcaattaccatggccgaaacgatcaaaatgatgctagcagcggtccatgagaaaaaaccaac |
1555996 |
T |
|
| Q |
182 |
ttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggggggattgaactaatataaagctgccttaat |
281 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |
|
|
| T |
1555995 |
ttctacgactgaaattgcatttgatagcaaaattatgaataagatcccaaagattctgttgtcaacagggctcattgaactaatatccgccagccttaat |
1555896 |
T |
|
| Q |
282 |
tgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaaga |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1555895 |
tgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatatttcgccataaagttacgaccatctgatgatatctttagtacagggaaga |
1555796 |
T |
|
| Q |
382 |
tagccaatagcaagcatagtattgtcgagaccaccgcgacaatggaagttttaatcctacgccatgcgatgatggcagctttgcgcctactcttggcgac |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| || | | ||||| |||||||||||||||| |
|
|
| T |
1555795 |
tagccaatagcaagcatagtattgtcgagaccacggcgacaatggaagttttgttcctacggcat---attaacagatctttgagcctactcttggcgac |
1555699 |
T |
|
| Q |
482 |
gatggaagttgtgtgcctatgc |
503 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1555698 |
gatggaagttgtgtgcctatgc |
1555677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 140 - 351
Target Start/End: Original strand, 1454298 - 1454509
Alignment:
| Q |
140 |
gatcaaaatgatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctg |
239 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| || ||||||||||||||||| |||| | ||| || ||| ||||||||||||||||||| | | |
|
|
| T |
1454298 |
gatcaaaaagatgctagcaacagtccatgagaaaatactaacttctatgactgaaactgcactaaatatcacaagcatgaataagatcccaaagacgcgg |
1454397 |
T |
|
| Q |
240 |
ttgtcaacaggggggattgaactaatataaagctgccttaattgaataaagaaaacaagagggacgagtatgaccatgatgatattctcatattttgcca |
339 |
Q |
| |
|
|||||||||||| | || || | || | ||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1454398 |
ttgtcaacagggaaggttatcgcaacagaacacagcccaaattgaataaataaataaagagggacgagtatgaccatgatgatattctcatgttttgcca |
1454497 |
T |
|
| Q |
340 |
taaagttacgac |
351 |
Q |
| |
|
| |||||||||| |
|
|
| T |
1454498 |
tgaagttacgac |
1454509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 449 - 503
Target Start/End: Original strand, 1456155 - 1456209
Alignment:
| Q |
449 |
gatgatggcagctttgcgcctactcttggcgacgatggaagttgtgtgcctatgc |
503 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1456155 |
gatgatgccagcattgcgcctactcttggcgacgatggaagttgtgtgcctatgc |
1456209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 459 - 503
Target Start/End: Complemental strand, 1567180 - 1567136
Alignment:
| Q |
459 |
gctttgcgcctactcttggcgacgatggaagttgtgtgcctatgc |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1567180 |
gctttgcgcctactcttggcgacgatggaagttgtgtgcctatgc |
1567136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 321 - 411
Target Start/End: Original strand, 1430084 - 1430174
Alignment:
| Q |
321 |
atattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatagtattgtcgaga |
411 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| ||||| | ||||||| ||||||||||| |||||| ||||||||||||||| |||| |
|
|
| T |
1430084 |
atattctgatattttgccatgaagtttgcaccatatgatgttgtctttagggtagggaagataaccaataccaagcatagtattgttgaga |
1430174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 2164278 - 2164326
Alignment:
| Q |
195 |
attgcagttgatagcaaaagtatgaataagatcccaaagattctgttgt |
243 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||||||| ||||||| |
|
|
| T |
2164278 |
attgcagttgatagcagaattatgaataagaccccaaagatgctgttgt |
2164326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 2162050 - 2162105
Alignment:
| Q |
180 |
acttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagat |
235 |
Q |
| |
|
|||||||| | ||| |||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
2162050 |
acttctataaatgatattgcacttgatagaagaagtatgaataagatcccaaagat |
2162105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 411
Target Start/End: Complemental strand, 1462990 - 1462896
Alignment:
| Q |
317 |
gatgatattctcatattttgccataaagttacgaccatctgatgatatctttagtatagggaagatagccaatagcaagcatagtattgtcgaga |
411 |
Q |
| |
|
||||||||||| ||||||| |||| |||||| |||||| | || | ||| |||| ||||||||| | |||||| |||| |||||||||| |||| |
|
|
| T |
1462990 |
gatgatattctgatatttttccatgaagttagcaccatcagttgttgtctgtagtgtagggaagaaaaccaataccaagtatagtattgttgaga |
1462896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 1754131 - 1754212
Alignment:
| Q |
154 |
tagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagat |
235 |
Q |
| |
|
|||||||| ||||||| | ||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
1754131 |
tagcagcaatccatgatacaaaactaacttccatgactgaaattgcacttgatagtccaagtatgaataagatcccaaagat |
1754212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 1750087 - 1750189
Alignment:
| Q |
149 |
gatgctagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaaca |
248 |
Q |
| |
|
|||| |||||||||||||||| ||| ||| |||||||| || |||| ||||| ||||||| ||||| ||||||||||||||||| ||||| |||| | |
|
|
| T |
1750087 |
gatgatagcagcagtccatgataaataactaacttctacgattgaagttgcacttgatagttcaagtaagaataagatcccaaagacgctgttatcaata |
1750186 |
T |
|
| Q |
249 |
ggg |
251 |
Q |
| |
|
||| |
|
|
| T |
1750187 |
ggg |
1750189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5318 times since January 2019
Visitors: 5756