View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0774_low_7 (Length: 385)
Name: NF0774_low_7
Description: NF0774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0774_low_7 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 247 - 381
Target Start/End: Complemental strand, 12812801 - 12812667
Alignment:
| Q |
247 |
tagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctccttcaccac |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
12812801 |
tagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctcctttgccac |
12812702 |
T |
|
| Q |
347 |
ctccgtagccagaagcaccatgctctcccccacca |
381 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| |
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|
| T |
12812701 |
ctccgtagccagactcgccatgctctcccccacca |
12812667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 247 - 381
Target Start/End: Complemental strand, 12749709 - 12749575
Alignment:
| Q |
247 |
tagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctccttcaccac |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
12749709 |
tagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctaccccaccaccataacctcctccagctccacctcctttgccac |
12749610 |
T |
|
| Q |
347 |
ctccgtagccagaagcaccatgctctcccccacca |
381 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| |
|
|
| T |
12749609 |
ctccgtagccagactcgccatgctctcccccacca |
12749575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 247 - 385
Target Start/End: Complemental strand, 12812732 - 12812594
Alignment:
| Q |
247 |
tagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctccttcaccac |
346 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||| | || ||||||||||| |||||||||||||||| |
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|
| T |
12812732 |
tagcctcctccagctccacctcctttgccacctccgtagccagactcgccatgctctcccccaccagcgtaacctcctccagccccacctccttcaccac |
12812633 |
T |
|
| Q |
347 |
ctccgtagccagaagcaccatgctctcccccaccaccat |
385 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
12812632 |
ctccatagccagaatcaccatgctctcccccaccaccat |
12812594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 250 - 385
Target Start/End: Complemental strand, 12812864 - 12812732
Alignment:
| Q |
250 |
cctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctccttcaccacctc |
349 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12812864 |
cctccgccagcaccaccaccttcaccaccaccgtaaccaata---ccatgctctcccccaccaccatagcctcctccagctccacctccttcaccacctc |
12812768 |
T |
|
| Q |
350 |
cgtagccagaagcaccatgctctcccccaccaccat |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12812767 |
cgtagccagaagcaccatgctctcccccaccaccat |
12812732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 250 - 385
Target Start/End: Complemental strand, 12749772 - 12749640
Alignment:
| Q |
250 |
cctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctccttcaccacctc |
349 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12749772 |
cctccgccagcaccaccaccttcaccaccaccgtaaccaata---ccatgctctcccccaccaccatagcctcctccagctccacctccttcaccacctc |
12749676 |
T |
|
| Q |
350 |
cgtagccagaagcaccatgctctcccccaccaccat |
385 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
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|
| T |
12749675 |
cgtagccagaagcaccatgctctaccccaccaccat |
12749640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 12812660 - 12812572
Alignment:
| Q |
250 |
cctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctcc |
338 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||| |
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|
| T |
12812660 |
cctcctccagccccacctccttcaccacctccatagccagaatcaccatgctctcccccaccaccataacctcctccagcgccagctcc |
12812572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 12749556 - 12749480
Alignment:
| Q |
262 |
ccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctcc |
338 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||| |
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|
| T |
12749556 |
ccacctccttcaccgcctccatagccagaatcaccatgctctcccccaccaccataacctcctccagcgccagctcc |
12749480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 385
Target Start/End: Complemental strand, 12749637 - 12749502
Alignment:
| Q |
250 |
cctcctccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctccttcaccacctc |
349 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||| | | | | | |||||||||||||| |||| |
|
|
| T |
12749637 |
cctcctccagctccacctcctttgccacctccgtagccagactcgccatgctctcccccaccagcttttttttttttttccccacctccttcaccgcctc |
12749538 |
T |
|
| Q |
350 |
cgtagccagaagcaccatgctctcccccaccaccat |
385 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
12749537 |
catagccagaatcaccatgctctcccccaccaccat |
12749502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 12749487 - 12749399
Alignment:
| Q |
256 |
ccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctccttcaccacc |
347 |
Q |
| |
|
|||||||||||||||| |||||| || || ||| | ||||||||||| ||| |||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
12749487 |
ccagctccacctccttgaccaccaccataaccac---ctccatgctctccaccattaccataacctccaccagctccacctccttgaccacc |
12749399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 12812579 - 12812491
Alignment:
| Q |
256 |
ccagctccacctccttcaccacctccgtagccagaagcaccatgctctcccccaccaccatagcctcctccagctccacctccttcaccacc |
347 |
Q |
| |
|
|||||||||||||||| |||||| || || ||| | ||||||||||| ||| |||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
12812579 |
ccagctccacctccttgaccaccaccataaccac---ctccatgctctccaccattaccataacctccaccagctccacctccttgaccacc |
12812491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1869574 - 1869511
Alignment:
| Q |
1 |
catcatttgtaaggtacataatgctctaaaagagtctcatttttcttttaaaaaacatttgcgg |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1869574 |
catcatttgtaaggtacataatgctctaaaagagtctcatttttcttttaaaaaacatatgcgg |
1869511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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