View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0775_high_11 (Length: 349)
Name: NF0775_high_11
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_high_11 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 26 - 329
Target Start/End: Original strand, 41772432 - 41772735
Alignment:
| Q |
26 |
catcatcaacccccaatgctctatcattctcactatcatcaaaatattcaccatctgactcatcatcactgctcccagacttctcatcatcagaacacac |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
41772432 |
catcatcaacccccaatgctctatcattctcactatcatcaaaatattcaccatctgactcatcttcactgctcccatacttctcatcatcagaacacac |
41772531 |
T |
|
| Q |
126 |
caacacaccttttcctttcttatctaccttttccttctctagtccttctccatttacatcaacctcagaactttgtccaacttccctattagtaacaata |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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|
| T |
41772532 |
caacacaccttttcctttcttatctaccttttccttctctagtccttctccatttacatcaacctcagaactttgtccaacttccctattactaacagta |
41772631 |
T |
|
| Q |
226 |
acacagtttggaacatccaccaacctactaacttcatcaacatcatgttctacaaaaaagttaattgccttgtttactttcaaagcatattccttcatct |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
41772632 |
acacagtttggaacatccaccaacctactaacttcatcaacatcatgttctacaaaaaagttaattggcttgtttactttcaaagcatattccttcatct |
41772731 |
T |
|
| Q |
326 |
cact |
329 |
Q |
| |
|
|||| |
|
|
| T |
41772732 |
cact |
41772735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 26 - 329
Target Start/End: Complemental strand, 35597702 - 35597399
Alignment:
| Q |
26 |
catcatcaacccccaatgctctatcattctcactatcatcaaaatattcaccatctgactcatcatcactgctcccagacttctcatcatcagaacacac |
125 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |
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|
| T |
35597702 |
catcatcaacccccaatgctctatcatgctcaatatcatcaaaatattcaccatctgactcatcttcactgctccctaacttctcatcatcataacacac |
35597603 |
T |
|
| Q |
126 |
caacacaccttttcctttcttatctaccttttccttctctagtccttctccatttacatcaacctcagaactttgtccaacttccctattagtaacaata |
225 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
35597602 |
caacacacattttcctttcttgtctaccttttccttctctagtccttctccatttacatcaacctgagaactttgtccaacttccctattagtaacagta |
35597503 |
T |
|
| Q |
226 |
acacagtttggaacatccaccaacctactaacttcatcaacatcatgttctacaaaaaagttaattgccttgtttactttcaaagcatattccttcatct |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
35597502 |
acacagtttggaacatccaccaacctactaacttcatcaacatcatgttctacaaaaaagttaactggcttgtttactttcaaagcatattccttcatct |
35597403 |
T |
|
| Q |
326 |
cact |
329 |
Q |
| |
|
|||| |
|
|
| T |
35597402 |
cact |
35597399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 26 - 329
Target Start/End: Original strand, 13650905 - 13651208
Alignment:
| Q |
26 |
catcatcaacccccaatgctctatcattctcactatcatcaaaatattcaccatctgactcatcatcactgctcccagacttctcatcatcagaacacac |
125 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13650905 |
catcatcaccccccaatgctctatcatgctcactatcatcaaaatattcaccatctgactcatcttcactgctccctgacttctcatcatcagaacacac |
13651004 |
T |
|
| Q |
126 |
caacacaccttttcctttcttatctaccttttccttctctagtccttctccatttacatcaacctcagaactttgtccaacttccctattagtaacaata |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |
|
|
| T |
13651005 |
caacacaccttttcctttcttatctaccttttccttctctagtccatctccatttacatcaacctgagaactttgtccaacttccctattaataacagta |
13651104 |
T |
|
| Q |
226 |
acacagtttggaacatccaccaacctactaacttcatcaacatcatgttctacaaaaaagttaattgccttgtttactttcaaagcatattccttcatct |
325 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
13651105 |
acacagcttggaacatccaccaacatactaacttcatcaacatcatgttctacaaacaagttaactggcttgttttctttcaaagcatattccttcatct |
13651204 |
T |
|
| Q |
326 |
cact |
329 |
Q |
| |
|
|||| |
|
|
| T |
13651205 |
cact |
13651208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 26 - 329
Target Start/End: Complemental strand, 47734289 - 47733986
Alignment:
| Q |
26 |
catcatcaacccccaatgctctatcattctcactatcatcaaaatattcaccatctgactcatcatcactgctcccagacttctcatcatcagaacacac |
125 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47734289 |
catcatcaccccccaatgctctatcatgctcactatcatcaaaatattcaccatctgactcatcttcactgctccctgacttctcatcatcagaacacac |
47734190 |
T |
|
| Q |
126 |
caacacaccttttcctttcttatctaccttttccttctctagtccttctccatttacatcaacctcagaactttgtccaacttccctattagtaacaata |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |
|
|
| T |
47734189 |
caacacaccttttcctttcttatctaccttttccttctctattccatctccatttacatcaacctgagaactttgtccaacttccctattaataacagta |
47734090 |
T |
|
| Q |
226 |
acacagtttggaacatccaccaacctactaacttcatcaacatcatgttctacaaaaaagttaattgccttgtttactttcaaagcatattccttcatct |
325 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
47734089 |
acacagcttggaacatccaccaacatactaacttcatcaacatcatgttctacaaacaagttaactggcttgttttctttcaaagcatattccttcatct |
47733990 |
T |
|
| Q |
326 |
cact |
329 |
Q |
| |
|
|||| |
|
|
| T |
47733989 |
cact |
47733986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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