View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0775_high_12 (Length: 335)

Name: NF0775_high_12
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0775_high_12
NF0775_high_12
[»] chr1 (16 HSPs)
chr1 (55-325)||(48179339-48179609)
chr1 (60-268)||(47873854-47874062)
chr1 (107-267)||(40140972-40141136)
chr1 (113-247)||(2417749-2417886)
chr1 (111-260)||(40027189-40027337)
chr1 (111-268)||(49287413-49287567)
chr1 (53-257)||(33860546-33860750)
chr1 (53-257)||(33920173-33920377)
chr1 (113-248)||(37847219-37847359)
chr1 (57-257)||(45196748-45196954)
chr1 (50-266)||(49440278-49440494)
chr1 (191-273)||(41186128-41186210)
chr1 (57-182)||(49540497-49540622)
chr1 (167-240)||(49540418-49540491)
chr1 (56-89)||(40027131-40027164)
chr1 (113-177)||(37850074-37850138)
[»] chr3 (3 HSPs)
chr3 (56-259)||(14964282-14964485)
chr3 (192-258)||(540434-540500)
chr3 (192-260)||(485609-485677)
[»] chr7 (1 HSPs)
chr7 (107-248)||(32347364-32347505)
[»] chr5 (2 HSPs)
chr5 (107-250)||(31266823-31266969)
chr5 (191-232)||(1204363-1204404)
[»] chr6 (3 HSPs)
chr6 (192-255)||(34606051-34606114)
chr6 (192-255)||(34727328-34727391)
chr6 (192-255)||(33465645-33465708)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 55 - 325
Target Start/End: Original strand, 48179339 - 48179609
Alignment:
Q  55 tgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattac 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179339 tgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcagtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattac 48179438  T
Q  155 gcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttat 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179439 gcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttat 48179538  T
Q  255 tgtacaacgtgttatttttcctaaaacaaaaaatttgcttattgtacaccgtttaacttgtggtctctgtg 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48179539 tgtacaacgtgttatttttcctaaaacaaaaaatttgcttattgtacaccgtttaacctgtggtctctgtg 48179609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 60 - 268
Target Start/End: Original strand, 47873854 - 47874062
Alignment:
Q  60 ggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttc 159  Q
    ||||||||||| ||||||||||||| |||| ||  || |||| |  |||| || ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  47873854 ggatatgagagcaactctgtgtatgccatcagttcttcatctacactatgtagagtgtattcaggggatgataaaaaattgtaaaaatgcattacgcttc 47873953  T
Q  160 cagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtac 259  Q
    |||||| ||||||| ||  |||||  ||||  ||||| |||||||| |||| || |||||| || |||| ||||| ||||||||||||||| ||||||||    
T  47873954 cagctcctcatggatcacattccctgatgttggattgttgttttagacatctacgatatgaggttgatttttctccagttgagtaacttgcatattgtac 47874053  T
Q  260 aacgtgtta 268  Q
    | |||||||    
T  47874054 atcgtgtta 47874062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 107 - 267
Target Start/End: Original strand, 40140972 - 40141136
Alignment:
Q  107 atgcagtgtgtattcaggagatgataaaaaa-ttgcaaaaatgcattacgcttccagctcttc---atggaacaagttcccacatgtacgattggtgttt 202  Q
    |||||||||||||||||| |||||||||||| || |||||||| || ||| ||||||||| ||   ||||||||  ||| |||||||  |||||||||||    
T  40140972 atgcagtgtgtattcaggcgatgataaaaaaattacaaaaatgtatcacgtttccagctcctccttatggaacagattctcacatgttggattggtgttt 40141071  T
Q  203 taggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtacaacgtgtt 267  Q
    ||| |||| ||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||||    
T  40141072 tagacatctacaatatgaggtagattattctctagttgagtaacttgcatgttgtacaccgtgtt 40141136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 247
Target Start/End: Complemental strand, 2417886 - 2417749
Alignment:
Q  113 tgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttc---atggaacaagttcccacatgtacgattggtgttttaggcat 209  Q
    |||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||   ||||||||  ||| |||||||  |||||||||||||| |||    
T  2417886 tgtgtattcaggggatgataaaaaattgcaaaaatgtagtacgcttccagctcctccgtatggaacagattctcacatgttggattggtgttttagacat 2417787  T
Q  210 caacaatatgaagtagattattctctagttgagtaact 247  Q
    | ||||||||| ||||||||||||  ||||||||||||    
T  2417786 ctacaatatgaggtagattattcttcagttgagtaact 2417749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 40027189 - 40027337
Alignment:
Q  111 agtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatc 210  Q
    |||||||||||||| |||| ||||||||| |||||||| |||||||||||||||| ||||||||||  |||   |||||  ||||| |||||||| | ||    
T  40027189 agtgtgtattcaggggatggtaaaaaattacaaaaatgtattacgcttccagctcctcatggaacattttctagcatgttggattgatgttttagacctc 40027288  T
Q  211 aacaatatgaagtagattattctctagttgagtaacttgcttattgtaca 260  Q
     || || ||| |||||||||||||| |||||||||||||| |||||||||    
T  40027289 tacgat-tgaggtagattattctcttgttgagtaacttgcatattgtaca 40027337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 49287413 - 49287567
Alignment:
Q  111 agtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatc 210  Q
    ||||||||||  || ||||||||||||||| |||||||||||| |||||||||||   ||| | ||  |||| ||||||  |||||||| ||||| ||||    
T  49287413 agtgtgtatttcggggatgataaaaaattgaaaaaatgcattatgcttccagctc---atgcagcacattcctacatgtttgattggtgatttagacatc 49287509  T
Q  211 aacaatatgaagtagattattctctagttgagtaacttgcttattgtacaacgtgtta 268  Q
     ||||||||| ||||||||||| |||||||||| |||||  |||| |||| |||||||    
T  49287510 tacaatatgaggtagattattccctagttgagtgacttggatattatacaccgtgtta 49287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 257
Target Start/End: Original strand, 33860546 - 33860750
Alignment:
Q  53 cctgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcatt 152  Q
    |||||||||||||||||| |||||||||||| |||||  |   || | | |   ||| |||||||||||| ||||||||||||| ||||||||||| |||    
T  33860546 cctgtggggatatgagagcaactctgtgtatatcatcaatcaattttttacaagatgtagtgtgtattcatgagatgataaaaagttgcaaaaatgtatt 33860645  T
Q  153 acgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgctt 252  Q
    ||| || || || || ||||||||||||| | |||||  ||||||||| ||||   || ||   ||||| |||||||||||||||||||||| | ||| |    
T  33860646 acggtttcaactgttgatggaacaagttctctcatgtttgattggtgtattagatgtctacggaatgaaatagattattctctagttgagtagcctgcat 33860745  T
Q  253 attgt 257  Q
    |||||    
T  33860746 attgt 33860750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 257
Target Start/End: Complemental strand, 33920377 - 33920173
Alignment:
Q  53 cctgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcatt 152  Q
    |||||||||||||||||| |||||||||||| |||||  |   || | | |   ||| |||||||||||| ||||||||||||| ||||||||||| |||    
T  33920377 cctgtggggatatgagagcaactctgtgtatatcatcaatcaattttttacaagatgtagtgtgtattcatgagatgataaaaagttgcaaaaatgtatt 33920278  T
Q  153 acgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgctt 252  Q
    ||| || || || || ||||||||||||| | |||||  ||||||||| ||||   || ||   ||||| |||||||||||||||||||||| | ||| |    
T  33920277 acggtttcaactgttgatggaacaagttctctcatgtttgattggtgtattagatgtctacggaatgaaatagattattctctagttgagtagcctgcat 33920178  T
Q  253 attgt 257  Q
    |||||    
T  33920177 attgt 33920173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 37847219 - 37847359
Alignment:
Q  113 tgtgtattcaggagatgataaaaaattgc-----aaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggc 207  Q
    ||||||||||||||||||||| ||||||      |||||||||||||||||| || | | ||||||||||| | ||||| ||  |||||||| ||||| |    
T  37847219 tgtgtattcaggagatgataacaaattgagaaaaaaaaatgcattacgcttctaggtttccatggaacaagattccacaagtttgattggtgatttagac 37847318  T
Q  208 atcaacaatatgaagtagattattctctagttgagtaactt 248  Q
    ||  || ||||||||||||||||| ||||||||||||||||    
T  37847319 atgtacgatatgaagtagattattttctagttgagtaactt 37847359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 57 - 257
Target Start/End: Original strand, 45196748 - 45196954
Alignment:
Q  57 tggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgc 156  Q
    |||||||||||| | || ||| |||||| ||||  | |||||||| |  |||| |||| |||||||||  |||||||||||||||||||| ||||||| |    
T  45196748 tggggatatgagtgcaattctatgtatgacatcaatcttttatctacaatatgtagtgcgtattcagggaatgataaaaaattgcaaaaaagcattacac 45196847  T
Q  157 ttc------cagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgc 250  Q
    |||      |||||| | ||| |||||  |     |||| ||||||||||||||| ||||||||||||||  ||||||||||||||||| ||||||||||    
T  45196848 ttctagttccagctcctgatgcaacaatgtgtttgatgttcgattggtgttttagacatcaacaatatgagatagattattctctagttaagtaacttgc 45196947  T
Q  251 ttattgt 257  Q
     ||||||    
T  45196948 atattgt 45196954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 266
Target Start/End: Complemental strand, 49440494 - 49440278
Alignment:
Q  50 gaacctgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgc 149  Q
    |||| |||||||||||||||| || ||||| ||||||||| || |||||||| |   ||| |   |||||||| | || ||||||||||  ||||| | |    
T  49440494 gaacatgtggggatatgagagtaattctgtttatgtcatcagtgttttatctacaacatgtatcatgtattcatgggacgataaaaaatcacaaaagtac 49440395  T
Q  150 attacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttg 249  Q
    || |||||||||  || |||||  ||| | | |  ||||| ||||||||||||||| |||| || | ||||||||||||||||||| ||| |||||||||    
T  49440394 atcacgcttccaaatcctcatgatacaggcttctccatgttcgattggtgttttagacatctacgacatgaagtagattattctctggtttagtaacttg 49440295  T
Q  250 cttattgtacaacgtgt 266  Q
    | ||||| |||| ||||    
T  49440294 catattgcacaatgtgt 49440278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 191 - 273
Target Start/End: Original strand, 41186128 - 41186210
Alignment:
Q  191 cgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtacaacgtgttattttt 273  Q
    ||||||||| |||||||||| |||||||||  ||||||||| |||||||||||||||||| |||||||||  |||||| ||||    
T  41186128 cgattggtggtttaggcatctacaatatgagatagattattttctagttgagtaacttgcatattgtacattgtgttactttt 41186210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 49540622 - 49540497
Alignment:
Q  57 tggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgc 156  Q
    |||||||| ||||| |||||| ||||||||||| || ||  |||| |  |||| |||||||||||||| ||||||||||| || ||||||| |||||       
T  49540622 tggggatacgagagcaactctatgtatgtcatccgtcttggatctacaatatgtagtgtgtattcaggtgatgataaaaagtttcaaaaatacattaaaa 49540523  T
Q  157 ttccagctcttcatggaacaagttcc 182  Q
    ||||||||| ||||| ||||||||||    
T  49540522 ttccagctcctcatgaaacaagttcc 49540497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 49540491 - 49540418
Alignment:
Q  167 tcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttg 240  Q
    ||||||||||||||||  |||||  ||||| ||||||||  ||| || |||||| |||||||||||||||||||    
T  49540491 tcatggaacaagttccttcatgttggattgttgttttagaaatctacgatatgaggtagattattctctagttg 49540418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 40027131 - 40027164
Alignment:
Q  56 gtggggatatgagagaaactctgtgtatgtcatc 89  Q
    ||||||||||||||| ||||||||||||||||||    
T  40027131 gtggggatatgagagtaactctgtgtatgtcatc 40027164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 37850074 - 37850138
Alignment:
Q  113 tgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaa 177  Q
    |||| |||||||  ||||||| |||||| |||||||||||||| ||||| || | ||||||||||    
T  37850074 tgtgcattcagggaatgataacaaattgtaaaaatgcattacgtttccaactttccatggaacaa 37850138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 56 - 259
Target Start/End: Original strand, 14964282 - 14964485
Alignment:
Q  56 gtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacg 155  Q
    |||||||||||| || |||||||||||||||||| || |||||||| |  |||| ||||||||||| || ||||||||| ||||||||||||||||||||    
T  14964282 gtggggatatgaaagcaactctgtgtatgtcatcagtcttttatctacaatatgtagtgtgtattctggggatgataaacaattgcaaaaatgcattacg 14964381  T
Q  156 cttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 255  Q
    ||||||||||   ||| |||||| | |   |||   |||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  14964382 cttccagctccagatgcaacaaggtgcttgatggtagattggtgttttagacatctacaatatgaagtagattattctctagttgagtaatttgcatatt 14964481  T
Q  256 gtac 259  Q
    ||||    
T  14964482 gtac 14964485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 540500 - 540434
Alignment:
Q  192 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgta 258  Q
    |||||||| ||||  |||||||||||||| || ||||||||||||| |||||||| || ||||||||    
T  540500 gattggtgctttaaacatcaacaatatgaggtggattattctctagatgagtaacatggttattgta 540434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 485677 - 485609
Alignment:
Q  192 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtaca 260  Q
    |||||||| ||||| |||||||||||||| || |||| ||||| || |||||||| || ||||||||||    
T  485677 gattggtgctttagacatcaacaatatgaggtggatttttctccagatgagtaacatggttattgtaca 485609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 107 - 248
Target Start/End: Complemental strand, 32347505 - 32347364
Alignment:
Q  107 atgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttagg 206  Q
    |||| |||| |||||||| |||||||||| ||||||||||||||||| ||||||||||| | |||||| ||| |||| || || |||||||||||||||     
T  32347505 atgccgtgtctattcaggggatgataaaagattgcaaaaatgcattatgcttccagctccttatggaaaaagatccctcaagttcgattggtgttttaga 32347406  T
Q  207 catcaacaatatgaagtagattattctctagttgagtaactt 248  Q
    |||| ||||| |||||||||||||||||||||||| ||||||    
T  32347405 catctacaatctgaagtagattattctctagttgaataactt 32347364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 250
Target Start/End: Original strand, 31266823 - 31266969
Alignment:
Q  107 atgcagtgtgtattcaggagatgataaaa---aattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgtttt 203  Q
    ||||| ||| |||||||| ||||||||||   ||||||||||||||||||| |||||| ||| | || |||||||||||   | || ||| | || ||||    
T  31266823 atgcaatgtctattcaggggatgataaaataaaattgcaaaaatgcattacacttccaactcctaatagaacaagttcctttaagttcgactagtatttt 31266922  T
Q  204 aggcatcaacaatatgaagtagattattctctagttgagtaacttgc 250  Q
    ||  ||| || || |||||||||||||||||||||||||||| ||||    
T  31266923 agaaatctacgatctgaagtagattattctctagttgagtaatttgc 31266969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 1204404 - 1204363
Alignment:
Q  191 cgattggtgttttaggcatcaacaatatgaagtagattattc 232  Q
    ||||||||||||||| |||||||| ||||| |||||||||||    
T  1204404 cgattggtgttttagacatcaacactatgaggtagattattc 1204363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 34606051 - 34606114
Alignment:
Q  192 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 255  Q
    |||||||||||||| |||| ||||||||| ||||||||| |||| |||||||| | ||||||||    
T  34606051 gattggtgttttagacatctacaatatgaggtagattatactctcgttgagtagcatgcttatt 34606114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 34727328 - 34727391
Alignment:
Q  192 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 255  Q
    |||||||||||||| |||| ||||||||| ||||||||| |||| |||||||| | ||||||||    
T  34727328 gattggtgttttagacatctacaatatgaggtagattatactctcgttgagtagcatgcttatt 34727391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 33465708 - 33465645
Alignment:
Q  192 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 255  Q
    |||||||||||||| |||| ||||||||| ||||||||| ||||  ||||||| | ||||||||    
T  33465708 gattggtgttttagacatctacaatatgaggtagattatactctttttgagtagcatgcttatt 33465645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 6757 times since January 2019
Visitors: 5771