View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0775_high_18 (Length: 291)
Name: NF0775_high_18
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 35508003 - 35508179
Alignment:
| Q |
1 |
ccgaacccttaagaaatgggtataagggaaatcaatggcaaaataagagaagagttggtccatgtgttgggaagcttcaccccatgacgcccagaagtga |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
35508003 |
ccgaacccttaagaaatgggtatgagggaaatcaatggccaaatgagagaagagttggtccatgtgtttggaagcttcacaccatgacgcccagaagtga |
35508102 |
T |
|
| Q |
101 |
agcaccgccggagaaccgccgcgaacaacctcatccaactccgactttgacttcacgtctcgcaccgaaccccccat |
177 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35508103 |
agcaccgccggagaaccgccgcgaaccacctcatccaactccgactttgacttcacgtctcgcaccgaaccacccat |
35508179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 34 times since January 2019
Visitors: 5776