View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0775_high_6 (Length: 438)

Name: NF0775_high_6
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0775_high_6
NF0775_high_6
[»] chr7 (9 HSPs)
chr7 (9-409)||(41514191-41514591)
chr7 (102-238)||(17883306-17883451)
chr7 (95-174)||(26402768-26402847)
chr7 (101-238)||(5248625-5248771)
chr7 (99-154)||(47405220-47405275)
chr7 (170-238)||(6388023-6388091)
chr7 (170-236)||(33899806-33899872)
chr7 (101-174)||(26804011-26804084)
chr7 (170-238)||(44319925-44319993)
[»] chr1 (13 HSPs)
chr1 (77-241)||(45925457-45925631)
chr1 (77-239)||(3483007-3483178)
chr1 (101-230)||(30494034-30494173)
chr1 (101-205)||(698818-698931)
chr1 (101-238)||(43492120-43492267)
chr1 (77-165)||(44958275-44958363)
chr1 (101-165)||(25670763-25670827)
chr1 (73-165)||(31822438-31822530)
chr1 (170-238)||(14758527-14758595)
chr1 (101-149)||(49003715-49003763)
chr1 (102-165)||(5224874-5224937)
chr1 (170-212)||(30076930-30076972)
chr1 (77-134)||(30529435-30529492)
[»] chr5 (13 HSPs)
chr5 (77-238)||(591192-591362)
chr5 (73-174)||(42265477-42265578)
chr5 (106-176)||(39046974-39047044)
chr5 (101-165)||(40872290-40872354)
chr5 (101-176)||(27146911-27146986)
chr5 (75-176)||(13978599-13978699)
chr5 (101-165)||(23129392-23129456)
chr5 (101-165)||(41520715-41520779)
chr5 (128-176)||(8415729-8415777)
chr5 (170-214)||(36486903-36486947)
chr5 (103-165)||(40458988-40459050)
chr5 (170-211)||(27146867-27146908)
chr5 (170-235)||(39046907-39046971)
[»] chr4 (19 HSPs)
chr4 (99-233)||(20787367-20787509)
chr4 (102-238)||(5047172-5047317)
chr4 (77-165)||(46521554-46521642)
chr4 (101-165)||(54495531-54495595)
chr4 (101-174)||(24753969-24754042)
chr4 (74-174)||(25751666-25751766)
chr4 (103-165)||(20180217-20180279)
chr4 (77-174)||(10042887-10042984)
chr4 (170-210)||(33266890-33266930)
chr4 (125-237)||(34124534-34124654)
chr4 (99-153)||(21988452-21988506)
chr4 (106-239)||(28695733-28695875)
chr4 (109-174)||(46088516-46088581)
chr4 (170-238)||(23135503-23135571)
chr4 (127-174)||(41690167-41690214)
chr4 (101-174)||(5091835-5091907)
chr4 (170-211)||(8607677-8607718)
chr4 (170-211)||(21988533-21988574)
chr4 (170-238)||(20176634-20176702)
[»] chr3 (8 HSPs)
chr3 (101-236)||(11465617-11465761)
chr3 (72-230)||(53641637-53641804)
chr3 (102-166)||(53605703-53605767)
chr3 (101-217)||(4275199-4275324)
chr3 (101-174)||(30364044-30364116)
chr3 (77-233)||(32734654-32734819)
chr3 (128-165)||(54911251-54911288)
chr3 (170-214)||(23554743-23554787)
[»] chr8 (7 HSPs)
chr8 (77-238)||(44254096-44254265)
chr8 (101-233)||(38236249-38236382)
chr8 (106-211)||(34336470-34336584)
chr8 (101-236)||(33649978-33650122)
chr8 (115-166)||(9774796-9774847)
chr8 (178-239)||(37231416-37231477)
chr8 (170-238)||(20142509-20142577)
[»] chr2 (6 HSPs)
chr2 (99-240)||(18375028-18375178)
chr2 (95-174)||(27501721-27501800)
chr2 (98-235)||(63856-63999)
chr2 (170-238)||(32493143-32493210)
chr2 (128-176)||(3666457-3666505)
chr2 (118-193)||(2796536-2796611)
[»] chr6 (5 HSPs)
chr6 (170-229)||(17124622-17124681)
chr6 (99-166)||(24797462-24797529)
chr6 (101-158)||(9975044-9975101)
chr6 (170-238)||(29407971-29408039)
chr6 (101-176)||(10345986-10346061)
[»] scaffold0018 (1 HSPs)
scaffold0018 (170-230)||(48755-48815)
[»] scaffold0019 (1 HSPs)
scaffold0019 (139-176)||(67446-67483)


Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Original strand, 41514191 - 41514591
Alignment:
Q  9 agcataggcaacaacgcatatattgaaatactccctccctcaatctccttggtgataaatatctaggaaaatgttaacgagtacttttaagacattgttt 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||    
T  41514191 agcatagacaacaacgcatatattgaaatactccctccctcaatctccttggtgataaatatctagtaaaatgttaacaagtgcttttaggacattgttt 41514290  T
Q  109 agtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaatttttaaagaataatttctttattaaaaatctttaatga 208  Q
    ||||| ||||||||| || ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41514291 agtaactttaaatagtaagttttagtcaaagtttatgaaatcaatgtattgaaaattaaaatttttaaagaataatttctttattaaaaatctttaatga 41514390  T
Q  209 gtgtccttatgacacttgttaacaagacccaaatatctattcattttacgtatcattaattgccccagccgactactttgtttatcacaacaaactcctc 308  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41514391 gtgtccttatgacacttgttaacaagactcaaatatctattcattttacttattattaattgccccagccgactactttgtttatcacaacaaactcctc 41514490  T
Q  309 catatacaagaaaacatagagttatgagagcataattatcattctggaattattacatgttttgattatataaaaagattataaagcttgcttcaaaata 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41514491 catatacaagaaaacatagagttatgagagcataattatcattctggaattattacatgttttgattatataaaaagattataaagattgcttcaaaata 41514590  T
Q  409 g 409  Q
    |    
T  41514591 g 41514591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 17883306 - 17883451
Alignment:
Q  102 attgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaattttt---------aaagaataatttctttat 192  Q
    |||||||||||| ||||||||| || ||||| ||||| |||||||||||||||  ||| |||||||| |||||         ||| ||||||||||||||    
T  17883306 attgtttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgcgttggaaattaaagtttttgacttttttaaaaaataatttctttat 17883405  T
Q  193 taaaaatctttaatgagtgtccttatgacacttgttaacaagaccc 238  Q
    |||||||| |||| ||||| ||||| |||||| |||||| ||||||    
T  17883406 taaaaatccttaaagagtgcccttaggacactcgttaactagaccc 17883451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 26402768 - 26402847
Alignment:
Q  95 ttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaattttt 174  Q
    ||||| ||||||||||||| ||||||||| || ||||| ||||| |||||||||||||||||||||||||| || |||||    
T  26402768 ttaaggcattgtttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgtattgaaaattgaagttttt 26402847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 5248625 - 5248771
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaa---------ttaaaatttttaaagaataatttcttta 191  Q
    ||||||||||||| ||||||||| || ||||| ||||||||||||||||||||| |||| |||         |||| |||||||||||||||||||||||    
T  5248625 cattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattggagtttttaacatttttaaagaataatttcttta 5248724  T
Q  192 ttaaaaatctttaatgagtgtccttatgacacttgttaacaagaccc 238  Q
    |||  |||| |||| ||||| ||||| |   || |||||||||||||    
T  5248725 ttaggaatccttaaagagtgcccttaaggggctcgttaacaagaccc 5248771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 47405220 - 47405275
Alignment:
Q  99 gacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatg 154  Q
    ||||||||||||||| ||||||||| || ||||| |||||||||||||||||||||    
T  47405220 gacattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatg 47405275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 6388023 - 6388091
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagaccc 238  Q
    |||||||||||||||||||||||||  |||| |||| ||||||| | | | ||||||||||||||||||    
T  6388023 tttttaaagaataatttctttattatgaatccttaaagagtgtcttaaaggcacttgttaacaagaccc 6388091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 33899806 - 33899872
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagac 236  Q
    ||||||| |||||||||||||||||  ||||||||| ||||| |||||  ||||| |||||||||||    
T  33899806 tttttaaggaataatttctttattaggaatctttaaagagtgcccttactacactcgttaacaagac 33899872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 26804011 - 26804084
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaattttt 174  Q
    ||||||||| ||| ||||||||| || ||||| ||||||||||| ||||||||| |||| ||||| || |||||    
T  26804011 cattgtttaataactttaaatagtaagtttttgtcaaagtttataaaatcaatgcattggaaattgaagttttt 26804084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 44319925 - 44319993
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagaccc 238  Q
    |||| ||| ||||||||||| ||| |||  | |||| ||||||||||| |||||| |||||||||||||    
T  44319925 ttttaaaaaaataatttcttaattgaaataccttaaagagtgtccttaggacactcgttaacaagaccc 44319993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 77 - 241
Target Start/End: Complemental strand, 45925631 - 45925457
Alignment:
Q  77 aaatgttaacgagtacttttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaa------- 169  Q
    ||||||||||||||  | |||| |||||||||||||| ||||||||| || ||||| |||||||||||||||||||||||||| |||||  ||           
T  45925631 aaatgttaacgagtgttcttaaaacattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgtattggaaatttgaatttttga 45925532  T
Q  170 --tttttaaagaataa-tttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagacccaaa 241  Q
      |||||||||||||| |||||||||||| |||| |||| ||||||||||| |||||| ||||||||||||||||    
T  45925531 cttttttaaagaataattttctttattaagaatccttaaagagtgtccttaggacactcgttaacaagacccaaa 45925457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 77 - 239
Target Start/End: Complemental strand, 3483178 - 3483007
Alignment:
Q  77 aaatgttaacgagtacttttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaa---------ttaa 167  Q
    |||||||||| |||||  ||| | ||||||||||||| ||||||||| || ||||| ||||||||||||||||| ||| ||||||||         || |    
T  3483178 aaatgttaacaagtacccttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcgatgcattgaaaattggagtttttga 3483079  T
Q  168 aatttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagaccca 239  Q
      ||||||||||||||||||||||||| ||||| |||| ||| | |||||||||||| ||||| ||||||||    
T  3483078 cttttttaaagaataatttctttattagaaatccttaaagagcgcccttatgacactcgttaataagaccca 3483007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 30494173 - 30494034
Alignment:
Q  101 cattgtttagtaa-ttttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaa---------atttttaaagaataatttcttt 190  Q
    ||||||||||||| |||||||||| || ||||| | |||| ||||||||||||||||||| ||||||||          ||||||||||||||| |||||    
T  30494173 cattgtttagtaaattttaaatagtaagtttttgttaaagattatgaaatcaatgtattggaaattaaagttttttacttttttaaagaataatctcttt 30494074  T
Q  191 attaaaaatctttaatgagtgtccttatgacacttgttaa 230  Q
    ||||||||||||||| ||||||| |||   ||||||||||    
T  30494073 attaaaaatctttaaagagtgtctttagagcacttgttaa 30494034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 698818 - 698931
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaa---------ttaaaatttttaaagaataatttcttta 191  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||||||||| |||| |||         ||||  ||||||| ||||||||||||||    
T  698818 cattgtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattggaaatttgagtttttaacttttttaatgaataatttcttta 698917  T
Q  192 ttaaaaatctttaa 205  Q
    ||||||||| ||||    
T  698918 ttaaaaatccttaa 698931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 43492120 - 43492267
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaa----------atttttaaagaataatttcttt 190  Q
    ||||| ||||||| ||||||||| |||||||| ||||||||||||||||||||| |||| ||||| ||           |||||||| ||||||||||||    
T  43492120 cattgcttagtaactttaaatagtaaatttttgtcaaagtttatgaaatcaatgcattggaaattgaagtttttgactttttttaaaaaataatttcttt 43492219  T
Q  191 attaaaaatctttaatgagtgtccttatgacacttgttaacaagaccc 238  Q
    ||||  |||| |||| ||||| ||||| | |||| |||||||||||||    
T  43492220 attaggaatccttaaagagtgcccttagggcactcgttaacaagaccc 43492267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 44958275 - 44958363
Alignment:
Q  77 aaatgttaacgagtacttttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatt 165  Q
    |||||||||| |||  | ||| || |||||||||||| ||||||||| |||||||| | ||||||||||||||||||| ||||||||||    
T  44958275 aaatgttaacaagtggtcttaggatattgtttagtaactttaaatagtaaatttttgttaaagtttatgaaatcaatgcattgaaaatt 44958363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 25670763 - 25670827
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatt 165  Q
    ||||||||||||| ||||||||| || ||||| | ||||||||||||||||||| ||||||||||    
T  25670763 cattgtttagtaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattgaaaatt 25670827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 31822530 - 31822438
Alignment:
Q  73 aggaaaatgttaacgagtacttttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatt 165  Q
    |||||||||||||| |||||  ||| ||||||||||||||| |||| |||| ||  |||| ||||||||||| ||||||||| ||| ||||||    
T  31822530 aggaaaatgttaacaagtacccttacgacattgtttagtaactttagatagtaagcttttgtcaaagtttataaaatcaatgcattaaaaatt 31822438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 14758595 - 14758527
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagaccc 238  Q
    ||||||| |||||||||||| |||  ||| |||||| ||||| ||||| |||||| |||||||||||||    
T  14758595 tttttaaggaataatttcttaattggaaaactttaaagagtgcccttaggacactcgttaacaagaccc 14758527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 49003763 - 49003715
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaat 149  Q
    ||||||||| ||| ||||||||| |||||||| ||||||||||||||||    
T  49003763 cattgtttaataactttaaatagtaaatttttgtcaaagtttatgaaat 49003715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 5224874 - 5224937
Alignment:
Q  102 attgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatt 165  Q
    |||||||| ||||||||||||| || ||||| | ||||||||| ||||||||| |||| |||||    
T  5224874 attgtttaataattttaaatagtaagtttttgttaaagtttataaaatcaatgcattgcaaatt 5224937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 30076930 - 30076972
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgt 212  Q
    |||||||||||| ||||||||||||||| | ||||||||||||    
T  30076930 tttttaaagaattatttctttattaaaattttttaatgagtgt 30076972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 30529492 - 30529435
Alignment:
Q  77 aaatgttaacgagtacttttaagacattgtttagtaattttaaatagcaaatttttat 134  Q
    |||||||||||||| ||||||||||||| ||||   | ||||||||| ||||||||||    
T  30529492 aaatgttaacgagtgcttttaagacattctttaaggactttaaatagtaaatttttat 30529435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 591192 - 591362
Alignment:
Q  77 aaatgttaacgagtacttttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaa-------- 168  Q
    |||||||||| ||| || ||| | ||||||||||||| ||||||||| || ||||| ||||||||||||||||||||| |||| ||||| ||            
T  591192 aaatgttaacaagtgctcttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattgaagttttcga 591291  T
Q  169 -atttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagaccc 238  Q
      ||||||||||||||||||||||||| ||||| |||| ||||||| ||| | |||| |||||||||||||    
T  591292 cttttttaaagaataatttctttattagaaatccttaaagagtgtctttagggcactcgttaacaagaccc 591362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 42265578 - 42265477
Alignment:
Q  73 aggaaaatgttaacgagtacttttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaattt 172  Q
    |||||||||||||| ||| |  ||| ||||||||||||||| |||| |||| || ||||| || |||||||||||||||||| |||||||||| ||||||    
T  42265578 aggaaaatgttaacaagtgcccttaggacattgtttagtaactttatatagtaagtttttgtctaagtttatgaaatcaatgcattgaaaattgaaattt 42265479  T
Q  173 tt 174  Q
    ||    
T  42265478 tt 42265477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 39047044 - 39046974
Alignment:
Q  106 tttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaatttttaa 176  Q
    |||||||| |||||||||  ||||||| ||||||||||||||||||||| ||||||||||||| |||||||    
T  39047044 tttagtaactttaaatagttaatttttctcaaagtttatgaaatcaatgcattgaaaattaaagtttttaa 39046974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 40872354 - 40872290
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatt 165  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||||||||| |||| |||||    
T  40872354 cattgtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattggaaatt 40872290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 27146986 - 27146911
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaatttttaa 176  Q
    ||||||||||||| ||||||||| || ||||| ||||||||||||||||||||| |||| |||||| | |||||||    
T  27146986 cattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattagagtttttaa 27146911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 176
Target Start/End: Original strand, 13978599 - 13978699
Alignment:
Q  75 gaaaatgttaacgagtacttttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaattttt 174  Q
    |||||||||||| ||| | ||||  |||||||||| ||||||||||||| || ||||  ||||||||||||||||||||| |||| ||||| || |||||    
T  13978599 gaaaatgttaacaagtgcatttagaacattgtttaataattttaaatagtaagttttg-tcaaagtttatgaaatcaatgcattggaaattgaagttttt 13978697  T
Q  175 aa 176  Q
    ||    
T  13978698 aa 13978699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 23129456 - 23129392
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatt 165  Q
    ||||||||||||| ||||||||| || ||||| ||||||||||||||||||||| |||| |||||    
T  23129456 cattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaatt 23129392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 41520779 - 41520715
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatt 165  Q
    ||||||||| ||| ||||||||| || ||||||||||||||||| ||||||||| |||| |||||    
T  41520779 cattgtttaataactttaaatagtaagtttttatcaaagtttataaaatcaatgcattggaaatt 41520715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 8415777 - 8415729
Alignment:
Q  128 tttttatcaaagtttatgaaatcaatgtattgaaaattaaaatttttaa 176  Q
    ||||| |||||||||||||||||||||||||| ||||| || |||||||    
T  8415777 tttttgtcaaagtttatgaaatcaatgtattggaaattgaagtttttaa 8415729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 36486947 - 36486903
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgtcc 214  Q
    ||||||||||||||||||||||||||||||  |||| ||||||||    
T  36486947 tttttaaagaataatttctttattaaaaatgcttaaagagtgtcc 36486903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 40459050 - 40458988
Alignment:
Q  103 ttgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatt 165  Q
    ||||||| ||| |||||| || || ||||| ||||||||||||||||||||| |||| |||||    
T  40459050 ttgtttaataactttaaagagtaagtttttgtcaaagtttatgaaatcaatgcattggaaatt 40458988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 27146908 - 27146867
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtg 211  Q
    ||||||||||||||||||||||||| ||||| |||| |||||    
T  27146908 tttttaaagaataatttctttattagaaatccttaaagagtg 27146867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 39046971 - 39046907
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaaga 235  Q
    ||||||||||||||||| |||||||| |||| |||| ||||||| ||| || ||| ||||||||||    
T  39046971 tttttaaagaataattt-tttattaagaatccttaaagagtgtcattaggatactcgttaacaaga 39046907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 20787509 - 20787367
Alignment:
Q  99 gacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaa--------aatttttaaagaataatttcttt 190  Q
    ||||||||||||| ||||||||| | ||| |||| |||||||||||||||||||||||||||||||| |        | |||||||| |||||||| |||    
T  20787509 gacattgtttagtgattttaaatggtaaaattttgtcaaagtttatgaaatcaatgtattgaaaattgaagtttttgactttttaaaaaataattttttt 20787410  T
Q  191 attaaaaatctttaatgagtgtccttatgacacttgttaacaa 233  Q
    |||||||||| |||| ||||| | ||| |||||| ||||||||    
T  20787409 attaaaaatccttaaagagtgcctttaggacactcgttaacaa 20787367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 5047317 - 5047172
Alignment:
Q  102 attgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaatttt---------taaagaataatttctttat 192  Q
    |||||||||||| ||||||||| || ||||| | ||||||||||||||||||| |||| ||||| |||||||         ||| |||||||||||||||    
T  5047317 attgtttagtaactttaaatagtaagttttttttaaagtttatgaaatcaatgcattggaaattgaaatttttgacttttgtaatgaataatttctttat 5047218  T
Q  193 taaaaatctttaatgagtgtccttatgacacttgttaacaagaccc 238  Q
    || ||||| |||||||||| ||||| | |||| |||||||| ||||    
T  5047217 tagaaatccttaatgagtgcccttagggcactcgttaacaaaaccc 5047172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 46521642 - 46521554
Alignment:
Q  77 aaatgttaacgagtacttttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatt 165  Q
    |||||||||| ||| |||||||||||||||||||| | ||||||||  |||||||| | ||||||||||||||||||| ||| ||||||    
T  46521642 aaatgttaacaagtgcttttaagacattgtttagtgactttaaataataaatttttgttaaagtttatgaaatcaatgcattaaaaatt 46521554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 54495595 - 54495531
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatt 165  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||||||||| ||||||||||    
T  54495595 cattgtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattgaaaatt 54495531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 24754042 - 24753969
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaattttt 174  Q
    |||||||||| || ||||||||| |||||||||| ||||||||||||||||||| |||| |||||||| |||||    
T  24754042 cattgtttagaaactttaaatagtaaatttttatgaaagtttatgaaatcaatgcattggaaattaaagttttt 24753969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 25751666 - 25751766
Alignment:
Q  74 ggaaaatgttaacgagtacttttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaatttt 173  Q
    ||||||| |||| | ||||| ||||||||||||||| ||| ||||||||| || ||||||| |||| ||||| ||| |||| ||||||||||||| ||||    
T  25751666 ggaaaatattaatgggtactcttaagacattgtttaataactttaaatagtaagtttttattaaagcttatgcaattaatgcattgaaaattaaattttt 25751765  T
Q  174 t 174  Q
    |    
T  25751766 t 25751766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 20180217 - 20180279
Alignment:
Q  103 ttgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatt 165  Q
    |||||||| || ||||||||| |||||||| |||||||||||||||| |||| ||||||||||    
T  20180217 ttgtttaggaactttaaatagtaaatttttgtcaaagtttatgaaattaatgcattgaaaatt 20180279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 10042984 - 10042887
Alignment:
Q  77 aaatgttaacgagtacttttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaattttt 174  Q
    |||||||||| ||| | |||||  ||||||||| ||| ||||||||| || ||||||| ||| ||||||||||||||| |||||| ||| || |||||    
T  10042984 aaatgttaacaagtgcctttaaagcattgtttaataactttaaatagtaagtttttattaaaatttatgaaatcaatgcattgaacattgaagttttt 10042887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 33266890 - 33266930
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagt 210  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  33266890 tttttaaagaataatttctttattaaaaatctttaaagagt 33266930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 34124534 - 34124654
Alignment:
Q  125 aaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaa--------tttttaaagaataatttctttattaaaaatctttaatgagtgtcctt 216  Q
    |||||||| ||||||||||||||||||||| ||||||||||  ||        |||||||| |||||||||||||||| ||||| ||||  ||||| |||    
T  34124534 aaatttttgtcaaagtttatgaaatcaatgcattgaaaattgtaattttgacttttttaaaaaataatttctttattagaaatccttaaaaagtgttctt 34124633  T
Q  217 atgacacttgttaacaagacc 237  Q
    | ||||||  |||| ||||||    
T  34124634 aggacactccttaataagacc 34124654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 21988452 - 21988506
Alignment:
Q  99 gacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaat 153  Q
    ||||||||||| ||| ||||||||| || ||||| ||||||||||||||||||||    
T  21988452 gacattgtttaataactttaaatagtaagtttttgtcaaagtttatgaaatcaat 21988506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 28695875 - 28695733
Alignment:
Q  106 tttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaattttt---------aaagaataatttctttattaaa 196  Q
    |||| ||| ||||||||| |||||||| |||||||||||||||| |||  |||| ||||| || |||||         ||| ||||||||||||||||      
T  28695875 tttaataactttaaatagtaaatttttgtcaaagtttatgaaattaatacattggaaattgaagtttttgacttttttaaaaaataatttctttattagt 28695776  T
Q  197 aatctttaatgagtgtccttatgacacttgttaacaagaccca 239  Q
    |||| |||| ||||| ||||| | |||| ||||||||||||||    
T  28695775 aatccttaaagagtgcccttagggcactcgttaacaagaccca 28695733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 46088516 - 46088581
Alignment:
Q  109 agtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaattttt 174  Q
    ||||| ||||||||| || ||||| ||||||||||||||||||||| |||| ||||| || |||||    
T  46088516 agtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattgaagttttt 46088581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 23135503 - 23135571
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagaccc 238  Q
    ||||||| ||||||||| ||||||| ||||| |||| |||||  |||| |||||| |||||||||||||    
T  23135503 tttttaaggaataatttttttattagaaatccttaaagagtgcacttaggacactcgttaacaagaccc 23135571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 41690167 - 41690214
Alignment:
Q  127 atttttatcaaagtttatgaaatcaatgtattgaaaattaaaattttt 174  Q
    |||||||||||||||||| ||||||||| |||| |||||| |||||||    
T  41690167 atttttatcaaagtttataaaatcaatgcattggaaattagaattttt 41690214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 5091835 - 5091907
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaattttt 174  Q
    ||||||||||||| ||||||||  |||||||| | ||| |||||| |||||||| |||||||||| || |||||    
T  5091835 cattgtttagtaactttaaataataaatttttgttaaattttatg-aatcaatgcattgaaaattgaagttttt 5091907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 8607677 - 8607718
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtg 211  Q
    |||||||||||||||||||||||||| ||| ||||| |||||    
T  8607677 tttttaaagaataatttctttattaagaatgtttaaagagtg 8607718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 21988533 - 21988574
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtg 211  Q
    |||||||||||||||||||||||||  ||||||||| |||||    
T  21988533 tttttaaagaataatttctttattatgaatctttaaagagtg 21988574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 20176634 - 20176702
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagaccc 238  Q
    ||||||| |||||||||||||||||  |||| |||| ||||| ||||| | |||| |||||||| ||||    
T  20176634 tttttaaggaataatttctttattatgaatccttaaggagtgcccttagggcactggttaacaataccc 20176702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 236
Target Start/End: Original strand, 11465617 - 11465761
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaatttt---------taaagaataatttcttta 191  Q
    |||| ||||| || ||||||||| || ||||| |||||||||||||||||| ||||||||||||| || ||||         ||||||||||||| ||||    
T  11465617 cattatttagaaactttaaatagtaagtttttgtcaaagtttatgaaatcactgtattgaaaattgaagtttttgacttttttaaagaataattttttta 11465716  T
Q  192 ttaaaaatctttaatgagtgtccttatgacacttgttaacaagac 236  Q
    ||||||||| |||| |||||| |||| |||||| |||||||||||    
T  11465717 ttaaaaatccttaaagagtgttcttaggacactcgttaacaagac 11465761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 72 - 230
Target Start/End: Original strand, 53641637 - 53641804
Alignment:
Q  72 taggaaaatgttaacgagtacttttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtatt-gaaaattaa--- 167  Q
    |||| |||||||||| ||||   |||||| |||||||| ||| ||| ||||| || ||||| ||||||||||||||||||||| ||| |||| ||||       
T  53641637 tagggaaatgttaacaagtatacttaagatattgtttaataactttgaatagtaagtttttgtcaaagtttatgaaatcaatgcattagaaatttaagtt 53641736  T
Q  168 -----aatttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaa 230  Q
         | ||||||||||||||||||||||||| |||||||||| ||||||||||| | |||| |||||    
T  53641737 tttgaattttttaaagaataatttctttattagaaatctttaaagagtgtccttaaggcactcgttaa 53641804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 53605767 - 53605703
Alignment:
Q  102 attgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatta 166  Q
    |||||||||||| ||||||||| || ||||||||||||||||| ||||||||| |||| ||||||    
T  53605767 attgtttagtaactttaaatagtaagtttttatcaaagtttataaaatcaatgcattggaaatta 53605703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 4275199 - 4275324
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatt---------aaaatttttaaagaataatttcttta 191  Q
    ||||||||| ||| ||||||||  || ||||| ||||||||||| |||||||||||||| || ||         ||  ||||||||||||||||| ||||    
T  4275199 cattgtttaataactttaaataataagtttttgtcaaagtttataaaatcaatgtattggaagttggagtttttaacttttttaaagaataattttttta 4275298  T
Q  192 ttaaaaatctttaatgagtgtcctta 217  Q
    |||| ||||||||| ||||| |||||    
T  4275299 ttaagaatctttaaagagtgccctta 4275324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 30364044 - 30364116
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaattttt 174  Q
    |||| ||||| || |||||||||||| ||||| | ||||||||||||||||||| | |||||||| ||||||||    
T  30364044 cattatttagcaactttaaatagcaagtttttgttaaagtttatgaaatcaatgga-tgaaaattgaaattttt 30364116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 233
Target Start/End: Complemental strand, 32734819 - 32734654
Alignment:
Q  77 aaatgttaacgagtacttttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaattttta- 175  Q
    ||||||| || ||||| |||| |||||| |||||||| ||||| ||| || ||||| ||||| |||||||||  |||| |||| |||||| | ||||||     
T  32734819 aaatgttgactagtacctttaggacattatttagtaactttaagtagtaagtttttgtcaaaatttatgaaactaatgcattggaaattagagtttttac 32734720  T
Q  176 --------aagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaa 233  Q
            |||||||||||||||||||  |||| |||| ||||| ||||| | |||| ||||||||    
T  32734719 cttttttaaagaataatttctttattaggaatccttaaagagtgcccttagggcactcgttaacaa 32734654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 54911288 - 54911251
Alignment:
Q  128 tttttatcaaagtttatgaaatcaatgtattgaaaatt 165  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  54911288 tttttatgaaagtttatgtaatcaatgtattgaaaatt 54911251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 23554743 - 23554787
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgtcc 214  Q
    |||||||| ||||||||||||||||| |||| |||| ||||||||    
T  23554743 tttttaaaaaataatttctttattaagaatccttaaagagtgtcc 23554787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 44254096 - 44254265
Alignment:
Q  77 aaatgttaacgagtacttttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaa-------- 168  Q
    |||||||||| ||| |  |||||||||| |||||||| ||||||||| || ||||| ||||| ||||||||||||||| |||| ||||| ||            
T  44254096 aaatgttaacaagtgcccttaagacatt-tttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgcattggaaattgaagtttttga 44254194  T
Q  169 -atttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagaccc 238  Q
      ||||||| ||| ||||||||||||| ||||| |||| ||||| ||||| |||||| |||||||||||||    
T  44254195 cttttttaaggaagaatttctttattagaaatccttaaagagtgcccttaggacactcgttaacaagaccc 44254265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 233
Target Start/End: Original strand, 38236249 - 38236382
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaa-attaaaatttttaaagaataatttctttattaaaaat 199  Q
    ||||||||| ||| ||||||||| ||| |||| ||||| ||||||||||||||| |||||||  || |  |||||||| ||||||||||||||||| |||    
T  38236249 cattgtttaataactttaaatagtaaaattttgtcaaaatttatgaaatcaatgcattgaaattttgacttttttaaaaaataatttctttattaagaat 38236348  T
Q  200 ctttaatgagtgtccttatgacacttgttaacaa 233  Q
    |  ||| ||||| |||||  ||||| ||||||||    
T  38236349 ccgtaaagagtgcccttagaacactcgttaacaa 38236382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 34336470 - 34336584
Alignment:
Q  106 tttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaa---------atttttaaagaataatttctttattaaa 196  Q
    |||||||| ||||||||| || ||||| ||||||||||||||||||||| |||| ||||| ||          ||||||||||||||||||||||||||     
T  34336470 tttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattgaagtttttgacttttttaaagaataatttctttattaag 34336569  T
Q  197 aatctttaatgagtg 211  Q
    |||| |||| |||||    
T  34336570 aatccttaaagagtg 34336584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 236
Target Start/End: Complemental strand, 33650122 - 33649978
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatta---------aaatttttaaagaataatttcttta 191  Q
    ||||||||||||| ||||||||| || ||||| ||||| | ||||||||||||| |||| ||||||         |  ||||| ||||||||||||||||    
T  33650122 cattgtttagtaactttaaatagtaagtttttgtcaaaatgtatgaaatcaatgcattggaaattagagttttagactttttttaagaataatttcttta 33650023  T
Q  192 ttaaaaatctttaatgagtgtccttatgacacttgttaacaagac 236  Q
    ||| ||||  |||| ||||||||||| | |||| ||| |||||||    
T  33650022 ttagaaattcttaaagagtgtccttagggcactcgttgacaagac 33649978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 9774847 - 9774796
Alignment:
Q  115 tttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatta 166  Q
    ||||||||| |||||||| |||||| |||||||||||||| |||||||||||    
T  9774847 tttaaatagtaaatttttgtcaaagcttatgaaatcaatgcattgaaaatta 9774796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 37231416 - 37231477
Alignment:
Q  178 gaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagaccca 239  Q
    ||||||||||||||||  |||||||||| ||||| ||| | | |||| ||||||||||||||    
T  37231416 gaataatttctttatttgaaatctttaaagagtgccctaagggcactcgttaacaagaccca 37231477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 20142509 - 20142577
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagaccc 238  Q
    |||| ||| ||||||||||| ||| |||  | |||| ||||||||||| |||||| |||||||||||||    
T  20142509 ttttaaaaaaataatttcttaattgaaataccttaaagagtgtccttaggacactcgttaacaagaccc 20142577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 240
Target Start/End: Complemental strand, 18375178 - 18375028
Alignment:
Q  99 gacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaa---------ttaaaatttttaaagaataatttctt 189  Q
    ||||||||||||| | ||||||||| || ||||| ||||||||||||||||||||| ||||||||         || |  ||||||||||||||||||||    
T  18375178 gacattgtttagtgactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattgaaaattggagtttttgacttttttaaagaataatttctt 18375079  T
Q  190 tattaaaaatctttaatgagtgtccttatgacacttgttaacaagacccaa 240  Q
    |||||  |||| |||| ||||  ||||| || ||| |||||||||||||||    
T  18375078 tattaggaatccttaaagagtacccttaggatactcgttaacaagacccaa 18375028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 27501721 - 27501800
Alignment:
Q  95 ttaagacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaattttt 174  Q
    ||||||||||||||||||| ||||||||| || ||||| |||||||||||||||| |||| |||| ||||| || |||||    
T  27501721 ttaagacattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaattaatgcattggaaattgaagttttt 27501800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 63999 - 63856
Alignment:
Q  98 agacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaat---------ttttaaagaataatttct 188  Q
    |||||||||||||||| |||   ||| || ||||| ||||| |||||||||| |||||||| |||||||||||         ||||||||||||||||||    
T  63999 agacattgtttagtaacttt---tagtaagtttttgtcaaaatttatgaaattaatgtattaaaaattaaaatttttgacttttttaaagaataatttct 63903  T
Q  189 ttattaaaaatctttaatgagtgtccttatgacacttgttaacaaga 235  Q
    ||||||||| | |||||  | || ||||| |||||| ||||||||||    
T  63902 ttattaaaattttttaaaaaatgcccttaggacactcgttaacaaga 63856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 32493143 - 32493210
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagaccc 238  Q
    ||||| ||||||||||| |||||||| |||| |||| |||||||||||||||| | |||||||||||||    
T  32493143 tttttgaagaataattt-tttattaagaatccttaaagagtgtccttatgacagtcgttaacaagaccc 32493210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 3666457 - 3666505
Alignment:
Q  128 tttttatcaaagtttatgaaatcaatgtattgaaaattaaaatttttaa 176  Q
    ||||||| |||||||||| |||||||||||||| |||||||| ||||||    
T  3666457 tttttatgaaagtttatgtaatcaatgtattgagaattaaaaattttaa 3666505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 2796536 - 2796611
Alignment:
Q  118 aaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaatttttaaagaataatttctttatt 193  Q
    |||||| || ||||||| ||||||| || ||||| | ||||||||||| ||| ||||||| ||||||| |||||||    
T  2796536 aaatagtaattttttataaaagtttgtgtaatcagtatattgaaaattgaaaattttaaaaaataattactttatt 2796611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 17124681 - 17124622
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgtta 229  Q
    ||||||||||||||||| || |||||||||| |||||||||||||| | |||||||||||    
T  17124681 tttttaaagaataattttttcattaaaaatccttaatgagtgtcctcaagacacttgtta 17124622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 24797529 - 24797462
Alignment:
Q  99 gacattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaatta 166  Q
    ||||||||||||||| ||||||||| || ||||| ||||||||||||||||||||  |||| ||||||    
T  24797529 gacattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatacattggaaatta 24797462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 9975044 - 9975101
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtatt 158  Q
    ||||||||||||| ||||||||| |||||||| | |||||||||||||||||| ||||    
T  9975044 cattgtttagtaactttaaatagtaaatttttgttaaagtttatgaaatcaatatatt 9975101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 29408039 - 29407971
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaacaagaccc 238  Q
    |||||||||||||||||||||||||  |||| |||| ||||| ||||| | |||| |||||||||||||    
T  29408039 tttttaaagaataatttctttattaggaatccttaaagagtgcccttaaggcactcgttaacaagaccc 29407971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 10345986 - 10346061
Alignment:
Q  101 cattgtttagtaattttaaatagcaaatttttatcaaagtttatgaaatcaatgtattgaaaattaaaatttttaa 176  Q
    |||||||||||||| |||| ||| |||||||| | | | |||||| |||||||| |||||||||| || |||||||    
T  10345986 cattgtttagtaatcttaattagtaaatttttgttagaatttatgtaatcaatgcattgaaaattgaagtttttaa 10346061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 48815 - 48755
Alignment:
Q  170 tttttaaagaataatttctttattaaaaatctttaatgagtgtccttatgacacttgttaa 230  Q
    ||||||||||||||||||||||||| ||||| |||| |||||  |||| |||||| |||||    
T  48815 tttttaaagaataatttctttattagaaatcattaaagagtgctcttaggacactcgttaa 48755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 67446 - 67483
Alignment:
Q  139 gtttatgaaatcaatgtattgaaaattaaaatttttaa 176  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  67446 gtttatgaaatcaatgcattgaaaattaaagtttttaa 67483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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