View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_high_8 (Length: 399)
Name: NF0775_high_8
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 99 - 386
Target Start/End: Original strand, 54657373 - 54657660
Alignment:
| Q |
99 |
gaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgcttatgatgtgctacacgaatggagctgcatgcaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657373 |
gaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgcttatgatgtgctacacgaatggagctgcatgcaa |
54657472 |
T |
|
| Q |
199 |
cgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacagcccggccacatcaaatgcaatgttgacacgaccaatttccata |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657473 |
cgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacaggccggccacatcaaatgcaatgttgacacgaccaatttccata |
54657572 |
T |
|
| Q |
299 |
ataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaattaaatccgactacttgcacttatcttc |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54657573 |
ataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaattaaatctaactacttgcacttatcttc |
54657660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 99 - 390
Target Start/End: Original strand, 43733427 - 43733718
Alignment:
| Q |
99 |
gaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgcttatgatgtgctacacgaatggagctgcatgcaa |
198 |
Q |
| |
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||||||| || ||||||||||||||||||||||||||||||||| | | | | ||||||| ||||||||||||||| |||||||||||||||||| || |
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| T |
43733427 |
gaagagtcgttataccaagctttgggaggctacaaacacttcacccatctttaatgtctctcatgcttatgatgtgctccacgaatggagctgcatgtaa |
43733526 |
T |
|
| Q |
199 |
cgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacagcccggccacatcaaatgcaatgttgacacgaccaatttccata |
298 |
Q |
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||||||||| ||| ||||||||||||||||| ||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||| ||| |
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| T |
43733527 |
cgagctaagtatcatgcaagcccccaagatcatcaattgacgtggaccaagccgcagcccgaccatatcaaatgcaatgttgacacggtcaatttcaata |
43733626 |
T |
|
| Q |
299 |
ataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaattaaatccgactacttgcacttatcttcatct |
390 |
Q |
| |
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|||||| ||||| ||||| | ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
43733627 |
ataactttattactgcttacgatttatgctttagagactcaacgtgatctctattattaggtaaatccgactacttgaacttatcttcatct |
43733718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 98 - 390
Target Start/End: Complemental strand, 28570820 - 28570534
Alignment:
| Q |
98 |
agaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgcttatgatgtgctacacgaatggagctgcatgca |
197 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||| || ||| |||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
28570820 |
agaagagtcgtaataccaagctttgggaggctagaaacacttgacccaccttcattgtctcttatgctcatgatgtgctacacgaatggagctgcatgca |
28570721 |
T |
|
| Q |
198 |
acgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacagcccggccacatcaaatgcaatgttgacacgaccaatttccat |
297 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| || |||||||||||| || |||| |||||||||||||||||||||| | |||||||| || |
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| T |
28570720 |
acgagctaagcg---ggcaagccct-aagatcagcaatcgatgtggaccaagccgcaacccgaccacatcaaatgcaatgttgacgcatccaatttcaat |
28570625 |
T |
|
| Q |
298 |
aataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaattaaatccgactacttgcacttatcttcatct |
390 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||| |
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| T |
28570624 |
aataactctattatggcttacagtttatgctttagagactcaacatgatctctatt-ttaggtaaa-ctgactacttgcacttatcttcatct |
28570534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 287 - 390
Target Start/End: Complemental strand, 29928810 - 29928707
Alignment:
| Q |
287 |
ccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaattaaatccgactacttgcacttatcttc |
386 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
29928810 |
ccaatttcaataataactttattatggcttacaatttatgctttagagactcaacatgatctctgttatttgataaatgtgactacttgcacttatcttt |
29928711 |
T |
|
| Q |
387 |
atct |
390 |
Q |
| |
|
|||| |
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|
| T |
29928710 |
atct |
29928707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 29928936 - 29928835
Alignment:
| Q |
134 |
acacttcactgaccctcattgtctcttgtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagca |
233 |
Q |
| |
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||||||||| ||| ||||||||||| |||| |||||||| |||| ||||||| |||||||||| |||||| |||| | |||||||||||||||| || |
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| T |
29928936 |
acacttcacccaccttcattgtctctcatgctcatgatgtgttacatgaatggatttgcatgcaacaagctaaacatctgacaagcccccaagatcaaca |
29928837 |
T |
|
| Q |
234 |
ac |
235 |
Q |
| |
|
|| |
|
|
| T |
29928836 |
ac |
29928835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 42703227 - 42703168
Alignment:
| Q |
167 |
atgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaag |
226 |
Q |
| |
|
||||||||||| |||||||||| | ||||||| ||||||| |||||||| ||||||||| |
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|
| T |
42703227 |
atgatgtgctatacgaatggagtttcatgcaaagagctaaacatccggcgtgcccccaag |
42703168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 34763053 - 34763013
Alignment:
| Q |
298 |
aataactctattatggcttatggtttatgctttagagactc |
338 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
34763053 |
aataactctatcatgggctatggtttatgctttagagactc |
34763013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 34763794 - 34763834
Alignment:
| Q |
298 |
aataactctattatggcttatggtttatgctttagagactc |
338 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
34763794 |
aataactctatcatgggctatggtttatgctttagagactc |
34763834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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