View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0775_low_1 (Length: 574)

Name: NF0775_low_1
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0775_low_1
NF0775_low_1
[»] chr7 (5 HSPs)
chr7 (30-431)||(353996-354397)
chr7 (30-124)||(10580686-10580780)
chr7 (496-566)||(353861-353931)
chr7 (30-111)||(10575299-10575380)
chr7 (187-237)||(10580612-10580662)
[»] chr8 (1 HSPs)
chr8 (37-111)||(14261228-14261302)
[»] chr1 (1 HSPs)
chr1 (526-561)||(24579061-24579096)
[»] chr3 (1 HSPs)
chr3 (30-111)||(21584786-21584867)
[»] chr4 (2 HSPs)
chr4 (36-110)||(22898466-22898540)
chr4 (36-110)||(22950134-22950208)


Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 30 - 431
Target Start/End: Complemental strand, 354397 - 353996
Alignment:
Q  30 caatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttccttgaccagacattacaaac 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  354397 caatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgctatgtcactttgcacctccctttccttgaccagacattacaaac 354298  T
Q  130 acacacaatgactcaacactatttggacatgtttctatggagacaactgaaactcatcatttgttatgcgttgaagaatccataacactgctccagcaat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  354297 acacacaatgactcaacactatttggacatgtttctatggagacaactgaaactcatcatttgttatgcattgaagaatccataacactgctccagcaat 354198  T
Q  230 gatcacaattatggagtaatagagggaaagaataaagctaattctctactttacagttacataatgtatgaatttcacttgtctccttcccttcaacctt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354197 gatcacaattatggagtaatagagggaaagaataaagctaattctctactttacagttacataatgtatgaatttcacttgtctccttcccttcaacctt 354098  T
Q  330 caacagatcagacataaccaactgcgggtccgagtttctgagtcttttgatcaagcttctttgttatagtggcaaacttaaccttcaaaaacaaacatca 429  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354097 caatagatcagacataaccaactgcgggtccgagtttctgagtcttctgatcaagcttctttgttatagtggcaaacttaaccttcaaaaacaaacatca 353998  T
Q  430 ca 431  Q
    ||    
T  353997 ca 353996  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 10580780 - 10580686
Alignment:
Q  30 caatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttccttgaccagacatta 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  10580780 caatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcaatatcactttgcacctccctttcattgaccagacatta 10580686  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 496 - 566
Target Start/End: Complemental strand, 353931 - 353861
Alignment:
Q  496 aataaaaatagcaaaagattcactctttcttcgttcttacatgtttctttctctcttcccactttcatctc 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  353931 aataaaaatagcaaaagattcactctttcttcgttcttacatgtttctttctctcttcccactttcttctc 353861  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 10575380 - 10575299
Alignment:
Q  30 caatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcct 111  Q
    ||||| |||||||||||||||||| |||||||| |||||  | |  |||||||||||||||| ||||||||| |||||||||    
T  10575380 caatcgacgaatcgctggctttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttgcacccccctttcct 10575299  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 10580662 - 10580612
Alignment:
Q  187 catttgttatgcgttgaagaatccataacactgctccagcaatgatcacaa 237  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  10580662 catttgttatgcgttgaagaatccatgacactgctccaacaatgataacaa 10580612  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 14261228 - 14261302
Alignment:
Q  37 cgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcct 111  Q
    ||||||||||||||||| |||||||| |||||  | | ||| || |||||||||| |||||||||||||||||||    
T  14261228 cgaatcgctggctttgtgattccttggatgttgtcacgaagcactttgcgatgtctctttgcacctccctttcct 14261302  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 526 - 561
Target Start/End: Complemental strand, 24579096 - 24579061
Alignment:
Q  526 tcgttcttacatgtttctttctctcttcccactttc 561  Q
    ||||||||||||||||||||||||||||||||||||    
T  24579096 tcgttcttacatgtttctttctctcttcccactttc 24579061  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 21584786 - 21584867
Alignment:
Q  30 caatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcct 111  Q
    ||||| ||||||||||||||| || ||||| ||||||||| | | |||||| || |  |||| |||||||||||||||||||    
T  21584786 caatcgacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacctccctttcct 21584867  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 22898540 - 22898466
Alignment:
Q  36 acgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcc 110  Q
    |||||||||||||||||||||||| || |||||  | | ||| ||||| ||||||| |||||| || ||||||||    
T  22898540 acgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcc 22898466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 22950208 - 22950134
Alignment:
Q  36 acgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcc 110  Q
    |||||||||||||||||||||||| || |||||  | | ||| ||||| ||||||| |||||| || ||||||||    
T  22950208 acgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcc 22950134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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