View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_16 (Length: 379)
Name: NF0775_low_16
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 30 - 373
Target Start/End: Complemental strand, 46934959 - 46934616
Alignment:
| Q |
30 |
gcatgattacaataacannnnnnnactgataacgaatataacttttatttatgtttatcgacaatgttgtactgtatgaagaagtttatagcagtaacat |
129 |
Q |
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| T |
46934959 |
gcatgattacaataacatttttttactgataacgaatataacttttatttatgtttatcgacaatgttgtactgtatgaagaagtttatagcggtaacat |
46934860 |
T |
|
| Q |
130 |
ttgtcacatgaatacaattattttgactcaattattacacctcattgaaaacaaggaaattaagtgataaacaatttaataaatcttgagaggaaaaaga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46934859 |
ttgtcacatgaatacaattattttgactcaattattacacctcattgaaaacaaggaaattaagtgataaacaatttaataaatcttgagaggaaaaaga |
46934760 |
T |
|
| Q |
230 |
aaaaggactatctaatgtattagacatacaaaagaatgacactttatttgcttattcggacaggaacaactcgaaggggttgtgccttttgcaaggtaat |
329 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46934759 |
aaaaggactatctaatgtattagacatgcaaaagaatgacactttatttgcttattcggacaggaacaactcgaaggggttgtgccttttgcaaggtaat |
46934660 |
T |
|
| Q |
330 |
gccgaatttatcattcatgtccatatcttctggtttcatctcac |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46934659 |
gccgaatttatcattcatgtccatatcttctggtttcatgtcac |
46934616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 11106244 - 11106321
Alignment:
| Q |
291 |
aggaacaactcgaaggggttgtgccttttgcaaggtaatgccgaatttatcattcatgtccatatcttctggtttcat |
368 |
Q |
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|||||||| |||||||||||| |||||||| | ||||| || |||||||||| ||||| |||||||||||||||||| |
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| T |
11106244 |
aggaacaattcgaaggggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
11106321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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