View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0775_low_20 (Length: 341)

Name: NF0775_low_20
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0775_low_20
NF0775_low_20
[»] chr5 (3 HSPs)
chr5 (28-333)||(36847806-36848109)
chr5 (28-321)||(6162193-6162492)
chr5 (161-324)||(36859373-36859530)
[»] chr3 (2 HSPs)
chr3 (28-333)||(46522049-46522356)
chr3 (28-333)||(49881614-49881903)
[»] chr6 (4 HSPs)
chr6 (28-242)||(6679605-6679822)
chr6 (28-240)||(6774466-6774681)
chr6 (79-333)||(6765628-6765887)
chr6 (262-324)||(6679848-6679910)
[»] chr1 (1 HSPs)
chr1 (28-320)||(18135614-18135911)
[»] scaffold0299 (1 HSPs)
scaffold0299 (111-242)||(13459-13584)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 28 - 333
Target Start/End: Complemental strand, 36848109 - 36847806
Alignment:
Q  28 caggaatttggctctgaatgcagcaatcccaatcagcattgtgtatacatttcatatcttgattccgtcaagtattttaggcctgaaagaaggacaaaga 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36848109 caggaatttggctctgaatgcagcaatcccaatcagcattgtgtatacatttcatatcttgattccgtcaagtattttaggcctgaaagaaggacaaaga 36848010  T
Q  128 gtggggaagcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacacttaat 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  36848009 gtggggaagcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagattatttctatgtcaatagaact-ataaaatgaacacttaat 36847911  T
Q  228 ccttccattctttctatttatgcnnnnnnnnncctatcatcagattggataccttgatttttgcaagaaaaatggtttcttaacttgctacatatggtcc 327  Q
    |||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36847910 ccttccattctttctatttatgc-ttttttttcctatcatcagattggataccttgatttttgcaagaaaaatggtttctcaacttgctacatatggtcc 36847812  T
Q  328 tatgct 333  Q
    | ||||    
T  36847811 tgtgct 36847806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 28 - 321
Target Start/End: Complemental strand, 6162492 - 6162193
Alignment:
Q  28 caggaatttggctctgaatgcagcaatcccaatcagcattgtgtatacatttcatatcttgattccgtcaagtattttaggcctgaaagaaggacaaaga 127  Q
    ||||||||||||||||||||| ||||||||||||| | |||| ||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6162492 caggaatttggctctgaatgcggcaatcccaatcaacgttgtctatgcatatcatatcttgattctgtcaagtattttaggcctgaaagaaggacaaaga 6162393  T
Q  128 gtggggaagcccttcgtaccgtcgtttaccatgagatcctggta-tttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacacttaa 226  Q
    |||| |||||  || ||||| ||||||||||||||||  ||||| ||||||||||||| | |||||||||| ||||| ||||||||||||||||||||||    
T  6162392 gtggagaagcaatttgtaccttcgtttaccatgagatattggtattttttcttttaaactctatttctatgccaataaaactaataaaatgaacacttaa 6162293  T
Q  227 tccttccattctttctatttatg-----cnnnnnnnnncctatcatcagattggataccttgatttttgcaagaaaaatggtttcttaacttgctacata 321  Q
    || ||||||||| |||  |||||               | ||||||||||||||||||||||||||||| || ||||  ||||||| |||||||||||||    
T  6162292 tctttccattctctcttcttatgattttttctttctttcttatcatcagattggataccttgatttttgtaacaaaaggggtttctcaacttgctacata 6162193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 161 - 324
Target Start/End: Complemental strand, 36859530 - 36859373
Alignment:
Q  161 agatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacacttaatccttccattctttctatttatgcnnnnnnnnn- 259  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||||||||||         |||||||||||||||||||||||||||              
T  36859530 agatactggtatttttcttttaaactttatttctatgtcaagagaactaataaa---------taatccttccattctttctatttatgcttcttttttt 36859440  T
Q  260 --cctatcatcagattggataccttgatttttgcaagaaaaatggtttcttaacttgctacatatgg 324  Q
      | ||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||    
T  36859439 ttcttatcatcagattggataccttgatttttgcaagaaaggtggtttctcaacttgctacatatgg 36859373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 28 - 333
Target Start/End: Original strand, 46522049 - 46522356
Alignment:
Q  28 caggaatttggctctgaatgcagcaatcccaatcagcattgtgtatacatttcatatcttgattccgtcaagtattttaggcctgaaagaaggacaaaga 127  Q
    ||||| ||||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  46522049 caggagtttggctctgaatgcggaaatccgaatcagcgttgtgtatacatttcatatcttgattctgtcaagtattttatgcctgaaagaaggacaaaga 46522148  T
Q  128 gtggggaagcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacacttaat 227  Q
    |||| ||||||||||||||| ||||||||||||||||  ||||||||||||||||||   |||||| ||| |||||||||||||||||||| |||| |||    
T  46522149 gtggagaagcccttcgtaccttcgtttaccatgagatattggtatttttcttttaaa--ctatttcaatgccaatagaactaataaaatgagcactcaat 46522246  T
Q  228 ccttccattctttctatttatg----cnnnnnnnnncctatcatcagattggataccttgatttttgcaagaaaaatggtttcttaacttgctacatatg 323  Q
    |||| |||||||||||||||||              | ||||||||||||||||||||||||||||| || ||||  |||||| | ||||||||||||||    
T  46522247 ccttacattctttctatttatgttttttttttctttcttatcatcagattggataccttgatttttgtaaaaaaaggggtttcctgacttgctacatatg 46522346  T
Q  324 gtcctatgct 333  Q
    | ||| ||||    
T  46522347 ggcctgtgct 46522356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 333
Target Start/End: Original strand, 49881614 - 49881903
Alignment:
Q  28 caggaatttggctctgaatgcagcaatcccaatcagcattgtgtatacatttcatatcttgattccgtcaagtattttaggcctgaaagaaggacaaaga 127  Q
    ||||| || ||||| |||||| ||||||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  49881614 caggagttcggctccgaatgcggcaatccaaatcagcgttgtgtacacatttcatatcttgattctgtcaagtattttaggcctgagagaaggacaaaga 49881713  T
Q  128 gtggggaagcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacacttaat 227  Q
    |||| ||||||||||||||| | ||||||||||||||  |||||||||||||||||| | |||||||||| |||||||||||| ||                  
T  49881714 gtggagaagcccttcgtacctttgtttaccatgagatattggtatttttcttttaaactctatttctatgccaatagaactaaaaa-------------- 49881799  T
Q  228 ccttccattctttctatttatgcnnnnnnnnncctatcatcagattggataccttgatttttgcaagaaaaatggtttcttaacttgctacatatggtcc 327  Q
      ||||||||||||||||||||          ||||||||||||||||||||||||||||||| ||||||   ||||||| |||||||||||||||| ||    
T  49881800 --ttccattctttctatttatgtttttttcttcctatcatcagattggataccttgatttttgtaagaaacggggtttctcaacttgctacatatgggcc 49881897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 6679605 - 6679822
Alignment:
Q  28 caggaatttggctctgaatgcagc---aatcccaatcagcattgtgtatacatttcatatcttgattccgtcaagtattttaggcctgaaagaaggacaa 124  Q
    ||||||||||||||||||||| ||   ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||  ||||||||    
T  6679605 caggaatttggctctgaatgcggcggcaatcccaatcagcgttgtgtatacatatcatatcttgattccgtcaagtattttaggcctaaacaaaggacaa 6679704  T
Q  125 agagtggggaagcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacactt 224  Q
    ||||||| |||||||| |||||| ||||||||||||||||  |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||    
T  6679705 agagtggagaagccctacgtaccttcgtttaccatgagatattggtatttttcttttaaactctatttctatgccaatagaactaataaaatgaacactt 6679804  T
Q  225 aatccttccattctttct 242  Q
     |||||||||||||||||    
T  6679805 tatccttccattctttct 6679822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 28 - 240
Target Start/End: Complemental strand, 6774681 - 6774466
Alignment:
Q  28 caggaatttggctctgaatgcagc---aatcccaatcagcattgtgtatacatttcatatcttgattccgtcaagtattttaggcctgaaagaaggacaa 124  Q
    ||||||||||||||||||||| ||   ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||  ||||||||    
T  6774681 caggaatttggctctgaatgcggcggcaatcccaatcagcgttgtgtatacatatcatatcttgattccgtcaagtattttaggcctaaacaaaggacaa 6774582  T
Q  125 agagtggggaagcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacactt 224  Q
    ||||||| |||||||| |||||| ||||||||||||||||  |||||||||||||||||| | |||||||||| ||||||||||||||||| ||||||||    
T  6774581 agagtggagaagccctacgtaccttcgtttaccatgagatattggtatttttcttttaaactctatttctatgccaatagaactaataaaacgaacactt 6774482  T
Q  225 aatccttccattcttt 240  Q
    ||||||||||||||||    
T  6774481 aatccttccattcttt 6774466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 79 - 333
Target Start/End: Complemental strand, 6765887 - 6765628
Alignment:
Q  79 tcatatcttgattccgtcaagtattttaggcctgaaagaaggacaaagagtggggaagcccttcgtaccgtcgtttaccatgagatcctggtatttttct 178  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||  ||||||||||||    
T  6765887 tcatatcttgattccgtcaagtattttaggcctgaaaaaaggacaaagagtggcgatgcccttcgtaccgtcgtttaccatgagatattggtatttttct 6765788  T
Q  179 tttaaagtttatttctatgtcaatagaactaataaaatgaacacttaatccttccattctttctatttatgcnnnnnnnnnc-----ctatcatcagatt 273  Q
    || ||| | ||||| |||| ||||||||||||||||||||||||||||||||||| || ||| |  ||||||         |      ||||||||||||    
T  6765787 ttcaaactctatttttatgccaatagaactaataaaatgaacacttaatccttcctttttttttgcttatgctttttttttcttcttatatcatcagatt 6765688  T
Q  274 ggataccttgatttttgcaagaaaaatggtttcttaacttgctacatatggtcctatgct 333  Q
    ||||| ||||||||||| ||| |||  ||||||| |||||||||||||||| ||| ||||    
T  6765687 ggatatcttgatttttgtaaggaaaggggtttctcaacttgctacatatgggcctgtgct 6765628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 6679848 - 6679910
Alignment:
Q  262 tatcatcagattggataccttgatttttgcaagaaaaatggtttcttaacttgctacatatgg 324  Q
    ||||||||||||||||| ||||||||||| ||| |||  ||||||| ||||||||||||||||    
T  6679848 tatcatcagattggatatcttgatttttgtaaggaaaggggtttctcaacttgctacatatgg 6679910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 28 - 320
Target Start/End: Original strand, 18135614 - 18135911
Alignment:
Q  28 caggaatttggctctgaatgcagcaatcccaatcagcattgtgtatacatttcatatcttgattccgtcaagtattttaggcctgaaagaaggacaaaga 127  Q
    ||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  18135614 caggaatttggctctgaatgcggcaaccccaatcagcgttgtgtctacatttcatatcttgattccttcaagtattttagacctgaaagaaggacaaaga 18135713  T
Q  128 gtggggaagcccttcgta-------ccgtcgtttaccatgagatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaac 220  Q
    ||||  |||||||||| |       || || |||||||||||||  |||||||||| ||||||| | ||||||||||          |||||||||||||    
T  18135714 gtggataagcccttcgaagtttgtgccttcatttaccatgagatattggtatttttattttaaactctatttctatga---------taataaaatgaac 18135804  T
Q  221 acttaatccttccattctttctatttatgcnnnnnnnnn-------cctatcatcagattggataccttgatttttgcaagaaaaatggtttcttaactt 313  Q
    ||||||||||||||||||||||||||||||                ||| ||||||||||||||||||||||||||  |||||||  ||||||| |||||    
T  18135805 acttaatccttccattctttctatttatgcttttttttttttttttcctgtcatcagattggataccttgatttttataagaaaaggggtttctcaactt 18135904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 13459 - 13584
Alignment:
Q  111 tgaaagaaggacaaagagtggggaagcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagtttatttctatgtcaatagaactaa 210  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||  |||||      ||||||| | ||||||||||  |||||||||||    
T  13459 tgaaagaaggacaaagagtggtgaagcccttcttaccgtcgtttaccatgagatattggta------ttttaaactctatttctatgcaaatagaactaa 13552  T
Q  211 taaaatgaacacttaatccttccattctttct 242  Q
    ||||||||||||||||||||||||||||||||    
T  13553 taaaatgaacacttaatccttccattctttct 13584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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