View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_21 (Length: 338)
Name: NF0775_low_21
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_21 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0334 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 11177600 - 11177271
Alignment:
| Q |
16 |
cagaacctgtgttctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttcttatattatatcgctgcacatta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11177600 |
cagaacctgtgttctattttcgttcagcaatccaatttcttattactttcttactcaattccaattgttattacttattatattatatcgctgcacatta |
11177501 |
T |
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| Q |
116 |
ttactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaaactgctgctacgtcccttttctttcttttatttaattaaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11177500 |
ttactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagctgctgctacgtcccttttctttcttttatttaattaaat |
11177401 |
T |
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| Q |
216 |
tgaattgttgttgcggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttcgttgtttgcgctactgtttgg--- |
312 |
Q |
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| T |
11177400 |
tgaattgttgttgctgggctgagtatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgtttgcgctactgtttggtgt |
11177301 |
T |
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| Q |
313 |
----tgttcgatttcaattgcagttatgtt |
338 |
Q |
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| T |
11177300 |
ttggtgttcgatttcaattgcagttatgtt |
11177271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 16366 - 16684
Alignment:
| Q |
16 |
cagaacctgtgttctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttcttatattatatcgctgcacatta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16366 |
cagaacctgtgttctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttattatattatatcgctgcacatta |
16465 |
T |
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| Q |
116 |
ttactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaaactgctgctacgtcccttttctttcttttatttaattaaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16466 |
ttactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagttgctgctacgtcccttttctttcttttatttaattaaat |
16565 |
T |
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| Q |
216 |
tgaattg------------------ttgttgcggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttcgttgtt |
297 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
16566 |
tgaattgttgttgttggctgttccattgttgcgggactgagcatataacaattgttattgttgagtacgtgtgccatataatccatatattttcattgtt |
16665 |
T |
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| Q |
298 |
tgcgctactgtttggtgtt |
316 |
Q |
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||||||||||||||||||| |
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| T |
16666 |
tgcgctactgtttggtgtt |
16684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 16681 - 16713
Alignment:
| Q |
306 |
tgtttggtgttcgatttcaattgcagttatgtt |
338 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
16681 |
tgtttggtgttcgattccaattgcagttatgtt |
16713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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