View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_22 (Length: 337)
Name: NF0775_low_22
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 10188702 - 10188415
Alignment:
| Q |
19 |
aatataactgcgccgagctaagctttttggatacacgtttgacatcgtttataaacctgatt-gaaaaataaatgtgcagataccttatcttgaaaataa |
117 |
Q |
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| T |
10188702 |
aatataactgcgccgagctaagctttttggatacacgtttgacatcgtttataaacctgatttgaaaaataaaggtgcagataccttatcttgaaaataa |
10188603 |
T |
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| Q |
118 |
ggtaacgtatagatgctatatttttcattcaagtttccttaaaactactctgtaacactgattatttttctggttgagttaatttatttatcaatacaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10188602 |
ggtaacgtatagatgctatatttttcattcaagtttccttaaaactactctgtaacactgattatttttctggttgagttaatttatttatcaatacaat |
10188503 |
T |
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| Q |
218 |
tcagtttttctattccttttatggatcccatatcactaaccttgatgtaagcattaagcaccggttttattgcctcctgcacttctcc |
305 |
Q |
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| T |
10188502 |
tcagtttttctattccttttatggatcctatatcactaaccttgatgtaagcattaagcaccggttttattgcctcctgcacttctcc |
10188415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 29738002 - 29737829
Alignment:
| Q |
128 |
agatgctatatttttcattcaagtttccttaaaactactctgtaacactgattatttttctggttgagttaatttatttatcaatacaattcagtttttc |
227 |
Q |
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| T |
29738002 |
agatgctatatttttcatttaagtttccttaaaactactccgtaacattgataatttctctagttgagttaacgtaagtatcaatacaattctgtttttc |
29737903 |
T |
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| Q |
228 |
tattccttttatggatcccatatcactaaccttgatgtaagcattaagcaccggttttattgcctcctgcactt |
301 |
Q |
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|| ||||||| ||| ||| |||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||| |
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| T |
29737902 |
tagtccttttctgggtcctatatgactaaccttgatgtaagaattaagcactggttttatttcctcctgcactt |
29737829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 218 - 302
Target Start/End: Complemental strand, 28934814 - 28934730
Alignment:
| Q |
218 |
tcagtttttctattccttttatggatcccatatcactaaccttgatgtaagcattaagcaccggttttattgcctcctgcacttc |
302 |
Q |
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||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
28934814 |
tcagtttttctattcctattatgggtcctatatcacgaaccttgatgtaagcattaagcactggttttattgcctgctgcacttc |
28934730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 35 - 303
Target Start/End: Original strand, 35119304 - 35119568
Alignment:
| Q |
35 |
gctaagctttttggatacacgtttgacatcgtttataaacctgattga-aaaataaatgtgcagataccttatcttgaaaataaggtaacgtatagatgc |
133 |
Q |
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||||||||||| ||||||| || ||| |||||||||||||||||||| |||||||| || ||||||||| ||| ||||||||| || |||| || |
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| T |
35119304 |
gctaagcttttcggatacaggtctgatatcgtttataaacctgattgggaaaataaaggtacagatacctgatcctgaaaataaagtg-----tagaagc |
35119398 |
T |
|
| Q |
134 |
tatatttttcattcaagtttccttaaaactactctgtaacactgattatttttctggttgagttaatttatttatcaatacaattcagtttttctattcc |
233 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||| || || ||||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
35119399 |
tatatttttcatttaagtttccttaaaactactctgtaacactaattacttctcgggttgagttaacttaaatatcaatacaattcagtttttccattcc |
35119498 |
T |
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| Q |
234 |
ttttatggatcccatatcactaaccttgatgtaagcattaagcaccggttttattgcctcctgcacttct |
303 |
Q |
| |
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|||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35119499 |
ttttctgggtcctatatcactaaccttgatgtaagcattaagcactggttttattgcctcctgcacttct |
35119568 |
T |
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