View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0775_low_28 (Length: 326)

Name: NF0775_low_28
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0775_low_28
NF0775_low_28
[»] chr4 (1 HSPs)
chr4 (4-245)||(30360797-30361039)
[»] chr1 (1 HSPs)
chr1 (9-129)||(19916201-19916321)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 30360797 - 30361039
Alignment:
Q  4 gaacctgtgtaaggggtttacggaccttctctggaactgggattgggtccctgcaaggtacattcagatgaaaagaaatttaggctcactacttgtatca 103  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30360797 gaacctgtgtaaggggtttgcggaccttctctggaactgggattgggtccctgcaaggtacattcagatgaaaagaaatttaggctcactacttgtatca 30360896  T
Q  104 tcattgaaaatatgcatgcttcgaaaag-nnnnnnngtcctggttgttaaaatttctttggaagaaaatacgcatgcttnnnnnnngtcttgattgctca 202  Q
    |||||||||||||||||||||||||| |        |||||||||||| |||||||||| |||||||||||||||||||       ||||||||||||||    
T  30360897 tcattgaaaatatgcatgcttcgaaatgaaaaaaaagtcctggttgtttaaatttcttttgaagaaaatacgcatgcttaaaaaaagtcttgattgctca 30360996  T
Q  203 ctcttttaatactggttgcgccttaaattttctcatctgtgct 245  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30360997 ctcttttaatactggttgcgccttaaattttctcatctgtgct 30361039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 19916201 - 19916321
Alignment:
Q  9 tgtgtaaggggtttacggaccttctctggaactgggattgggtccctgcaaggtacattcagatgaaaagaaatttaggctcactacttgtatcatcatt 108  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19916201 tgtgtaaggggtttgcggaccttctctggaactgggattgggtccctgcaaggtacattcatatgaaaagaaatttaggctcactacttgtatcatcatt 19916300  T
Q  109 gaaaatatgcatgcttcgaaa 129  Q
    |||||||||||||||||||||    
T  19916301 gaaaatatgcatgcttcgaaa 19916321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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