View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0775_low_3 (Length: 477)
Name: NF0775_low_3
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_3 |
 | |
|
| [»] scaffold0689 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 95 - 455
Target Start/End: Complemental strand, 9231204 - 9230844
Alignment:
| Q |
95 |
atacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattct |
194 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9231204 |
atacttttttagacctattggcgatactacgtaggagtcctaaatttctacaatttgtatccatttttcatgatattagggatggatccaagcgaattct |
9231105 |
T |
|
| Q |
195 |
tcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaa |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9231104 |
tcgggaaaaattgtgtctttcaccacggaatcctatacgtgagattttgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttggaa |
9231005 |
T |
|
| Q |
295 |
aatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggatatctcgttcagacacatcttgtct |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9231004 |
aatgagtcaccattgatatcgacccatctgagggagttcttcgttttaaaccttatccttcttcttgttaccggatatctcgttcagacacatcttgtct |
9230905 |
T |
|
| Q |
395 |
ttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9230904 |
ttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat |
9230844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 95 - 455
Target Start/End: Original strand, 18351384 - 18351744
Alignment:
| Q |
95 |
atacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattct |
194 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18351384 |
atacttttttagacctattggcgatactacgtaggagtcctaaatttctacaatttgtatccatttttcatgatattagggatggatccaagcgaattct |
18351483 |
T |
|
| Q |
195 |
tcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaa |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18351484 |
tcgggaaaaattgtgtctttcaccacggaatcctatacgtgagattttgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttggaa |
18351583 |
T |
|
| Q |
295 |
aatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggatatctcgttcagacacatcttgtct |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18351584 |
aatgagtcaccattgatatcgacccatctgagggagttcttcgttttaaaccttatccttcttcttgttaccggatatctcgttcagacacatcttgtct |
18351683 |
T |
|
| Q |
395 |
ttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18351684 |
ttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat |
18351744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 95 - 275
Target Start/End: Original strand, 16902724 - 16902904
Alignment:
| Q |
95 |
atacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattct |
194 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16902724 |
atacttttttagacctattggcgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattct |
16902823 |
T |
|
| Q |
195 |
tcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16902824 |
tcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgtgtaagtgtcgacacaattttcttgtgcacgt |
16902904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 95 - 455
Target Start/End: Original strand, 2914810 - 2915168
Alignment:
| Q |
95 |
atacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattct |
194 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2914810 |
atacttttttagacctattggcaatactacgtgggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattct |
2914909 |
T |
|
| Q |
195 |
tcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaa |
294 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2914910 |
tcggaaaaaattgtgtctttcaccacggaatcctataagtgagattttgagtaagtgtctacacaattttcttgtgcacgtgtgcgaagatattttggaa |
2915009 |
T |
|
| Q |
295 |
aatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggatatctcgttcagacacatcttgtct |
394 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||| |
|
|
| T |
2915010 |
aatgagtcacca-tgataccaacccatctgagggagttcttcgttttaatccttatccttcttcttgttatcggatatctcgttcag-cacatcttttct |
2915107 |
T |
|
| Q |
395 |
ttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2915108 |
ttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat |
2915168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 95 - 301
Target Start/End: Original strand, 40808198 - 40808404
Alignment:
| Q |
95 |
atacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattct |
194 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40808198 |
atactcttttagacctattggcgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattct |
40808297 |
T |
|
| Q |
195 |
tcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaa |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40808298 |
tcgggaaaaattgtgtctttcaccacggaatcctacaagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttggaa |
40808397 |
T |
|
| Q |
295 |
aatgagt |
301 |
Q |
| |
|
||||||| |
|
|
| T |
40808398 |
aatgagt |
40808404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 21584860 - 21584900
Alignment:
| Q |
350 |
tccttcttcttgttaccggatatctcgttcagacacatctt |
390 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
21584860 |
tccttcttcttgttactggatatctcgttcatacatatctt |
21584900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 95 - 455
Target Start/End: Complemental strand, 7999643 - 7999283
Alignment:
| Q |
95 |
atacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattct |
194 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7999643 |
atacttttttagacctattgacgatactacgtaggagtcctaaatttcaacaatttgtgtccatttttcatgatattagagatggatccaagcgaattct |
7999544 |
T |
|
| Q |
195 |
tcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaa |
294 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||||| ||| ||||||||||||||||| || |
|
|
| T |
7999543 |
tcgggaaaaattgtgtctttcaccacagaatcctataagtgagattttgagtaagtgtttacataattttcttgagcatgtgtgcgaagatattttgaaa |
7999444 |
T |
|
| Q |
295 |
aatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggatatctcgttcagacacatcttgtct |
394 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
7999443 |
aatgagtcaccattgatatctacccatctgagggagttcttcgttttagtccttatccttcttcttgttaccggatatctcgtttagacaaatcttttct |
7999344 |
T |
|
| Q |
395 |
ttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat |
455 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7999343 |
ttgtttcttgattctctaatgagttacagaaagagttcgaagaagtcaaatctttgatgat |
7999283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 95 - 298
Target Start/End: Original strand, 30242170 - 30242372
Alignment:
| Q |
95 |
atacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattct |
194 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30242170 |
atacttttttagacctattggcgatactacgtaggagtcctaaattttaacaatttgtatc-atttttcatgatattagggatgaatccaagcgaattct |
30242268 |
T |
|
| Q |
195 |
tcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaa |
294 |
Q |
| |
|
| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
30242269 |
ttggaaaaaattgtgtctttcactacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaatatattttggaa |
30242368 |
T |
|
| Q |
295 |
aatg |
298 |
Q |
| |
|
|||| |
|
|
| T |
30242369 |
aatg |
30242372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 40561699 - 40561794
Alignment:
| Q |
7 |
gagcacagacagactcatgtttttggggattgattgactatacgagaatagcatttgaaaagggtgtgggggactccctcagctatatatactttt |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40561699 |
gagcagagacagactcatgtttttggggattgattgactatacgagaatggtatttgaaaagggtgtgggggactccctcagctatatatactttt |
40561794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 2612139 - 2612073
Alignment:
| Q |
146 |
aatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctt |
213 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| | ||||||||||| ||| |||||||||| |
|
|
| T |
2612139 |
aatttgtttccatttttcatgatattaggg-tggatccgaacgaattcttcgaaaaatattgtgtctt |
2612073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 342 - 455
Target Start/End: Original strand, 2043 - 2156
Alignment:
| Q |
342 |
aatccttatccttcttcttgttaccggatatctcgttcagacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtc |
441 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||||||| ||||||||| |||||||||| ||| || || |||||||||||||||||||||| | ||| |
|
|
| T |
2043 |
aatccttttccttcttcttgttgctggatatctcgttcgtacacatcttctctttgtttcccgagcctatagtgagttacagacagagttcgaaaaggtc |
2142 |
T |
|
| Q |
442 |
aaatctttgatgat |
455 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2143 |
aaatctttgatgat |
2156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 141 - 267
Target Start/End: Original strand, 1818 - 1953
Alignment:
| Q |
141 |
tcaacaatttgtatccatttttcatgatattagggatggatccaa---------gcgaattcttcgggaaaaattgtgtctttcaccacggaatcctata |
231 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||||||| | ||||||||||| | |||||||||||||| ||| | |||||| ||| |
|
|
| T |
1818 |
tcaaaaatttgtatccatttttcatgatattatgcatggatcagatatatcatggcgaattcttcagaaaaaattgtgtcttccacaatggaatctgata |
1917 |
T |
|
| Q |
232 |
agtgagatttcgagtaagtgtcgacacaattttctt |
267 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
1918 |
agtgagatttcgagtaagtgtttacataattttctt |
1953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 10627118 - 10627065
Alignment:
| Q |
129 |
gagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10627118 |
gagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatc |
10627065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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