View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_31 (Length: 323)
Name: NF0775_low_31
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 93 - 309
Target Start/End: Original strand, 4053652 - 4053868
Alignment:
| Q |
93 |
acaatggatcaatatatagtaacatcgtgtatcacctcatttatggtaaaaattattgattcaataatatatagaaacaaatttatgtatgatacaacac |
192 |
Q |
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| T |
4053652 |
acaatggatcaatatatagtaacatcgtgtttcacctcatttatggtaaaaattattgattcgataatatatagaaacaaatttctgtatgatacaacac |
4053751 |
T |
|
| Q |
193 |
atattttactaatcggtgcttcaggacactagttaaggaaacaaatataatagtattacattgtaacttgtataatcaattctttaaaagtgttgtttgt |
292 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
4053752 |
atattttactaatcggtgcttcagaacactagttaaggaaacaaatatagtagtattgcattataacttgtataatcaattctttaaaagtgttgtttgc |
4053851 |
T |
|
| Q |
293 |
aacttcaaacttgtttt |
309 |
Q |
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|| || ||||||||||| |
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| T |
4053852 |
aatttaaaacttgtttt |
4053868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 41128889 - 41128829
Alignment:
| Q |
225 |
ttaaggaaacaaatataatagtattacattgtaacttgtataatcaattctttaaaagtgt |
285 |
Q |
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|||||||| ||||||||||||||||| |||| ||||||| |||||||||| | |||||||| |
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| T |
41128889 |
ttaaggaagcaaatataatagtattatattggaacttgtgtaatcaattcctcaaaagtgt |
41128829 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 41143796 - 41143856
Alignment:
| Q |
225 |
ttaaggaaacaaatataatagtattacattgtaacttgtataatcaattctttaaaagtgt |
285 |
Q |
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|||||||| |||||||||||||||| |||| ||||||| |||||||||| | |||||||| |
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| T |
41143796 |
ttaaggaagcaaatataatagtattgtattggaacttgtgtaatcaattcctcaaaagtgt |
41143856 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 42795370 - 42795440
Alignment:
| Q |
213 |
tcaggacactagttaaggaaacaaatataatagtattacattgtaacttgtataatcaattctttaaaagt |
283 |
Q |
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||||| || |||||||||||||||||||| || | |||||||| |||||||| | |||| | ||||||||| |
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| T |
42795370 |
tcagggcaatagttaaggaaacaaatatagtaatcttacattgaaacttgtacattcaactttttaaaagt |
42795440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 305
Target Start/End: Original strand, 33405417 - 33405500
Alignment:
| Q |
219 |
cactagttaaggaaacaaatataatagtattacattgtaacttgtataatcaattctttaaaagtgttgtttgtaacttcaaacttg |
305 |
Q |
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|||| |||||||||||||||||| ||||||| ||||| ||||||| ||||||| ||||| |||||||||| ||||| ||||||| |
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| T |
33405417 |
cacttgttaaggaaacaaatatagtagtattgcattggaacttgtgtaatcaa---tttaagagtgttgttttcaacttaaaacttg |
33405500 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 40120039 - 40120096
Alignment:
| Q |
225 |
ttaaggaaacaaatataatagtattacattgtaacttgtataatcaattctttaaaag |
282 |
Q |
| |
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||||||||||||||||| || ||| ||||||||||||| ||||||||| ||||||| |
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| T |
40120039 |
ttaaggaaacaaatatagtaatatcgcattgtaacttgtgcaatcaattcattaaaag |
40120096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 18883992 - 18883924
Alignment:
| Q |
215 |
aggacactagttaaggaaacaaatataatagtattacattgtaacttgtataatcaattctttaaaagt |
283 |
Q |
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||||||||||||| | ||| ||||||| ||||||| ||||| || | ||||| ||||||||| |||||| |
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| T |
18883992 |
aggacactagttatgaaaataaatatagtagtattgcattgaaaatggtatagtcaattcttcaaaagt |
18883924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 54011758 - 54011710
Alignment:
| Q |
235 |
aaatataatagtattacattgtaacttgtataatcaattctttaaaagt |
283 |
Q |
| |
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||||||||||| | ||||||| ||||||| ||||| ||||||||||||| |
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| T |
54011758 |
aaatataatagcaatacattgaaacttgtgtaatctattctttaaaagt |
54011710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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