View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_32 (Length: 322)
Name: NF0775_low_32
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 37997518 - 37997663
Alignment:
| Q |
82 |
gagagtatccataaaacgacaaaactggtaaaaggcctcatagtctttgaaggtttgatcatttaaacggagaaccaagagtgaatagcagagtagggtc |
181 |
Q |
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| T |
37997518 |
gagagtatccataaaacgacaaaactggtaaaaggcctcatagtctttgaaggtttgatcatttaaacggagaaccaagagtgaacagcagagtagggtc |
37997617 |
T |
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| Q |
182 |
caccgctttgaaagaacagttgtagtaaaagcgagtttcattggta |
227 |
Q |
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| T |
37997618 |
caccgctttgaaagaacagttgtagtaaaagcgagtttcattggta |
37997663 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 43694530 - 43694585
Alignment:
| Q |
160 |
gagtgaatagcagagtagggtccaccgctttgaaagaacagttgtagtaaaagcga |
215 |
Q |
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| T |
43694530 |
gagtgaatagaagagtggggtccaccgctttgaaagaacagtggtggtcaaagcga |
43694585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 15398307 - 15398254
Alignment:
| Q |
160 |
gagtgaatagcagagtagggtccaccgctttgaaagaacagttgtagtaaaagc |
213 |
Q |
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| T |
15398307 |
gagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagc |
15398254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 15410094 - 15410041
Alignment:
| Q |
160 |
gagtgaatagcagagtagggtccaccgctttgaaagaacagttgtagtaaaagc |
213 |
Q |
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| T |
15410094 |
gagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagc |
15410041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 19317662 - 19317721
Alignment:
| Q |
160 |
gagtgaatagcagagtagggtccaccgctttgaaagaacagttgtagtaaaagcgagttt |
219 |
Q |
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|||||||||||||||| ||||||| ||||| ||||||| | |||||||||||| ||||| |
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| T |
19317662 |
gagtgaatagcagagttgggtccaacgcttggaaagaatggctgtagtaaaagctagttt |
19317721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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