View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_33 (Length: 322)
Name: NF0775_low_33
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 53 - 269
Target Start/End: Original strand, 30411070 - 30411286
Alignment:
| Q |
53 |
tttgaatggtttgagtaacaaggcatcctcttcatctgtgcgtctaactccaaggactgagggtgagatattacaatgcaacaatttgaagtgtttcaca |
152 |
Q |
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| T |
30411070 |
tttgagtggtttaagcaacaaggcatcctcttcatctgtgcttctaacttcaaagactgagggtgagatattacaatgcaacaatttgaagtgtttcaca |
30411169 |
T |
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| Q |
153 |
atcaatgagcttaaaactgctacaacgaactttcatccaagtggtcaagtcgatgaacgtgggtttggtagggtatttaaggggtggatcgatgaccaca |
252 |
Q |
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| T |
30411170 |
ttcaatgagctaaaaactgctacgacgtactttcatccaagcggtcaagtggatgaacgtgggtttggtagtgtctttaaggggtggatcgatgagcaca |
30411269 |
T |
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| Q |
253 |
ctctagctcctactaaa |
269 |
Q |
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| T |
30411270 |
cgctagctcctactaaa |
30411286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 59 - 282
Target Start/End: Original strand, 30408152 - 30408378
Alignment:
| Q |
59 |
tggtttgagtaacaaggcatcctcttcatctgtgcgtctaactccaaggactgagggtgagatattacaatgcaacaatttgaagtgtttcacaatcaat |
158 |
Q |
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| T |
30408152 |
tggtttgagcaacaaggtatcctcttcaactgttctgctaacttcaaggactgagggtgagatattacaatccaacaatttgaagtgtttcacattcaat |
30408251 |
T |
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| Q |
159 |
gagcttaaaactgctacaacgaactttcatccaagtggtcaagtcgatgaacgtgggtttggtagggtatttaaggggtggatcgatgaccacactctag |
258 |
Q |
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| T |
30408252 |
gaggtaaaaactgcgacaagaaactttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacatgcaag |
30408351 |
T |
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| Q |
259 |
ctcctactaa---aggtactggttttg |
282 |
Q |
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| T |
30408352 |
ctcctacgaaaccaggtactggttttg |
30408378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 288
Target Start/End: Original strand, 30421212 - 30421422
Alignment:
| Q |
81 |
tcttcatctgtgcgtctaactccaaggactgagggtgagatattacaatgcaacaatttgaagtgtttcacaatcaatgagcttaaaactgctacaacga |
180 |
Q |
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| T |
30421212 |
tcttcatctgtgcttctaagctctaggaccgagggtgagatattgcaatcaaactatttgaagtgtttcactatcaatgaggtaagagccgcgacaagga |
30421311 |
T |
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| Q |
181 |
actttcatccaagtggtcaagtcgatgaacgtgggtttggtagggtatttaaggggtggatcgatgaccacactctagctcctactaa---aggtactgg |
277 |
Q |
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| T |
30421312 |
actttcgtccagatagtatgattggcgaaggtggatttggttgtgtatttaagggttggatcgatgagcacacactagctcctactaaaccaggtactgg |
30421411 |
T |
|
| Q |
278 |
ttttgatattg |
288 |
Q |
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| T |
30421412 |
ttttgttattg |
30421422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 282
Target Start/End: Original strand, 30404343 - 30404558
Alignment:
| Q |
70 |
acaaggcatcctcttcatctgtgcgtctaactccaaggactgagggtgagatattacaatgcaacaatttgaagtgtttcacaatcaatgagcttaaaac |
169 |
Q |
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| T |
30404343 |
acaaagcagcctcttcatttgtgcctctaacttctaggactgaggatgaggtattgcgatccaacaatttgacgtgtttcactatcaacgaggtaagagc |
30404442 |
T |
|
| Q |
170 |
tgctacaacgaactttcatccaagtggtcaagtcgatgaacgtgggtttggtagggtatttaaggggtggatcgatgaccacactctagctcctacta-- |
267 |
Q |
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| T |
30404443 |
cgcaacaaggaactttcatccagatagtatgattggcaaaggtggatttggttgtgtatttaagggttggatcgatgagcacacactagccccgactaaa |
30404542 |
T |
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| Q |
268 |
-aaggtactggttttg |
282 |
Q |
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| T |
30404543 |
caaggtactggttttg |
30404558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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