View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0775_low_34 (Length: 320)

Name: NF0775_low_34
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0775_low_34
NF0775_low_34
[»] chr2 (14 HSPs)
chr2 (11-151)||(1895402-1895542)
chr2 (11-151)||(17281934-17282075)
chr2 (11-151)||(1551588-1551728)
chr2 (38-151)||(3921584-3921697)
chr2 (11-149)||(17375271-17375409)
chr2 (228-299)||(1895254-1895325)
chr2 (232-293)||(1551809-1551870)
chr2 (234-291)||(17282158-17282215)
chr2 (78-151)||(34660278-34660351)
chr2 (232-291)||(3921444-3921503)
chr2 (232-289)||(17375153-17375210)
chr2 (232-291)||(4869507-4869566)
chr2 (78-151)||(4869637-4869710)
chr2 (238-290)||(14950835-14950887)
[»] chr6 (5 HSPs)
chr6 (11-151)||(20740570-20740710)
chr6 (14-151)||(21881459-21881596)
chr6 (228-293)||(20740453-20740518)
chr6 (232-291)||(21881318-21881377)
chr6 (238-290)||(32747716-32747768)
[»] chr4 (17 HSPs)
chr4 (11-154)||(47518441-47518584)
chr4 (11-151)||(53202258-53202398)
chr4 (60-151)||(34227057-34227148)
chr4 (11-151)||(23054224-23054363)
chr4 (232-291)||(53202118-53202177)
chr4 (232-291)||(47518662-47518721)
chr4 (12-129)||(6410005-6410122)
chr4 (228-296)||(23054441-23054508)
chr4 (232-293)||(34227204-34227265)
chr4 (81-146)||(12469342-12469407)
chr4 (238-290)||(45873102-45873154)
chr4 (244-287)||(12489216-12489259)
chr4 (81-129)||(12466698-12466746)
chr4 (238-290)||(14441115-14441167)
chr4 (238-288)||(12130516-12130566)
chr4 (238-290)||(38093215-38093267)
chr4 (238-290)||(55728692-55728744)
[»] chr5 (20 HSPs)
chr5 (11-154)||(18696922-18697065)
chr5 (11-151)||(7766995-7767135)
chr5 (41-128)||(41355543-41355630)
chr5 (16-151)||(27170084-27170219)
chr5 (228-291)||(38958379-38958442)
chr5 (232-287)||(41355722-41355777)
chr5 (80-151)||(38958230-38958301)
chr5 (85-151)||(7271826-7271892)
chr5 (78-151)||(6030388-6030461)
chr5 (232-291)||(7271708-7271767)
chr5 (232-286)||(27170275-27170329)
chr5 (238-290)||(26331217-26331269)
chr5 (232-291)||(26656630-26656688)
chr5 (232-291)||(26928217-26928275)
chr5 (232-287)||(40599985-40600040)
chr5 (252-290)||(42221388-42221426)
chr5 (232-287)||(7767203-7767255)
chr5 (238-290)||(24867205-24867257)
chr5 (78-128)||(26656780-26656830)
chr5 (78-128)||(26928367-26928417)
[»] chr8 (8 HSPs)
chr8 (11-154)||(10408814-10408957)
chr8 (25-151)||(5994622-5994748)
chr8 (13-151)||(6444027-6444165)
chr8 (238-290)||(5994485-5994537)
chr8 (232-291)||(10408702-10408761)
chr8 (238-290)||(15050162-15050214)
chr8 (243-287)||(3763045-3763089)
chr8 (238-290)||(25142902-25142954)
[»] chr1 (13 HSPs)
chr1 (11-124)||(34117991-34118104)
chr1 (38-154)||(34654967-34655083)
chr1 (232-291)||(34654830-34654889)
chr1 (40-150)||(26236671-26236781)
chr1 (38-128)||(39709015-39709105)
chr1 (78-151)||(615753-615826)
chr1 (228-291)||(39709180-39709243)
chr1 (11-128)||(11407975-11408092)
chr1 (233-293)||(34117896-34117955)
chr1 (232-285)||(615638-615691)
chr1 (238-287)||(11814695-11814744)
chr1 (238-286)||(2077483-2077531)
chr1 (238-290)||(14351174-14351226)
[»] chr7 (4 HSPs)
chr7 (232-291)||(11698554-11698613)
chr7 (11-151)||(3302567-3302707)
chr7 (232-291)||(3302427-3302486)
chr7 (238-290)||(31039000-31039052)
[»] chr3 (5 HSPs)
chr3 (78-151)||(18269763-18269836)
chr3 (232-291)||(43275830-43275890)
chr3 (244-296)||(18269919-18269971)
chr3 (238-287)||(31699221-31699270)
chr3 (77-123)||(43275999-43276045)
[»] scaffold0157 (1 HSPs)
scaffold0157 (244-287)||(31218-31261)
[»] scaffold0027 (1 HSPs)
scaffold0027 (238-290)||(2938-2989)


Alignment Details
Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 1895542 - 1895402
Alignment:
Q  11 cataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagttt 110  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1895542 cataggtggtgattgatcggtcatgatggtggtgatgagtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttggttt 1895443  T
Q  111 gtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  1895442 gtggtacttcatggtggttttcttggtggtattgattttgg 1895402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 17281934 - 17282075
Alignment:
Q  11 cataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttag-tt 109  Q
    ||||||||||||| |||| ||||  ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||    
T  17281934 cataggtggtgatggatcagtcacaatggtggtgatggatcatatctaggtttgcttatgaacttatatggtttcgatggatctttggttgtgttggttt 17282033  T
Q  110 tgtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  17282034 tgtggtacttcatggtggttttcttggtggtgctgattttgg 17282075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 1551588 - 1551728
Alignment:
Q  11 cataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagttt 110  Q
    ||||||||||||| |||| |||| |||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  1551588 cataggtggtgatggatcagtcacgatggtggtgatggatcatgtataggttcgcttatgaacttatatagtttcgatggatctttggttgtgttggttt 1551687  T
Q  111 gtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    |||||||||| |||||||||||||||| || ||||||||||    
T  1551688 gtggtacttcgtggtggttttcttggtagtgctgattttgg 1551728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 3921697 - 3921584
Alignment:
Q  38 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 137  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||||    
T  3921697 ggtggtgatggatcatatctaagttcgcttatgaacttatatggttttgatggatgtttggttgtgttggtttgtggtacttcacggtggttttcttggt 3921598  T
Q  138 ggtactgattttgg 151  Q
    ||| ||||||||||    
T  3921597 ggtgctgattttgg 3921584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 17375409 - 17375271
Alignment:
Q  11 cataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagttt 110  Q
    ||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||    
T  17375409 cataggtggtgatggatcgatcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatggtttcgatgaatctttggttgtgttggttt 17375310  T
Q  111 gtggtacttcatggtggttttcttggtggtactgatttt 149  Q
    ||||| |||||||   |||||| ||||||| ||||||||    
T  17375309 gtggtgcttcatgacagttttcatggtggtgctgatttt 17375271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 1895325 - 1895254
Alignment:
Q  228 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatgatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  1895325 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtgttcaatggtagttttggtgatggtgatg 1895254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 1551809 - 1551870
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 293  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1551809 tgttgcttttaggtgagggttaatggtgatttttgaggtggtcaatggtagttttggtgatg 1551870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 17282158 - 17282215
Alignment:
Q  234 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17282158 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtaggtttggtga 17282215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 34660351 - 34660278
Alignment:
Q  78 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  34660351 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 34660278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 3921503 - 3921444
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3921503 tgttgcttttaggtgagggttaatggtgatttttgtggtggtaaatagtagttttggtga 3921444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 17375210 - 17375153
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggt 289  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  17375210 tgttgctttttggtgagggttaattgtggtttttgtggtggtcaatggtagttttggt 17375153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 4869566 - 4869507
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    ||||||||||  |||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  4869566 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtagtttttgtga 4869507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 4869710 - 4869637
Alignment:
Q  78 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    ||||||| ||||||||||||||||| || ||||| ||| |||||||| ||||||| || |||| ||||||||||    
T  4869710 atggttttgatggatctttggttgttttggtttgcggtgcttcatggcggttttcatgatggtgctgattttgg 4869637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 14950835 - 14950887
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  14950835 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 14950887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 20740710 - 20740570
Alignment:
Q  11 cataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagttt 110  Q
    ||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  20740710 cataggtggtgatggattggtcacgatggtggtgatggatcatatctaggttcggttatgaacttatatggtttcgatggatctttggttgtgttggttt 20740611  T
Q  111 gtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
     ||||||||||||||||||||||||||||| ||||||||||    
T  20740610 atggtacttcatggtggttttcttggtggtgctgattttgg 20740570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 21881596 - 21881459
Alignment:
Q  14 aggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtg 113  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||| |||| |||||||    
T  21881596 aggtggtgatggatcggtcacgatggtggtgatggatcatatctaggttcgcttatgaactgctatggtttcgatgaatctttggttatgttggtttgtg 21881497  T
Q  114 gtacttcatggtggttttcttggtggtactgattttgg 151  Q
    || ||||||||  ||| || ||||||| ||||||||||    
T  21881496 gtgcttcatggcagttatcatggtggtgctgattttgg 21881459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 20740518 - 20740453
Alignment:
Q  228 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 293  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20740518 ctgatgttgcttttaggtgaaggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 20740453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 21881377 - 21881318
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  21881377 tgttgctttttggtgagggttaatcgtgatttttgtggtggtcaatgctagttttggtga 21881318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 32747716 - 32747768
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  32747716 tttttggtgaggtgtaatggtggtttttgtggtggttaatggtagttttggtg 32747768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 47518441 - 47518584
Alignment:
Q  11 cataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagttt 110  Q
    ||||||||||||| |||| ||||  ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47518441 cataggtggtgatggatcagtcacaatggtggtgatgaatcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttcgttt 47518540  T
Q  111 gtggtacttcatggtggttttcttggtggtactgattttggatc 154  Q
    |||||||||||||||||||||||||||| | |||||||||||||    
T  47518541 gtggtacttcatggtggttttcttggtgttgctgattttggatc 47518584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 53202398 - 53202258
Alignment:
Q  11 cataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagttt 110  Q
    ||||||||||||  ||||||||| |||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||    
T  53202398 cataggtggtgacagatcggtcacgatggtggtgatgaatcatatctagattcgcttatgaacttatatggtttcgatggatctttggttgtattggttt 53202299  T
Q  111 gtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    ||||||||||||| ||||||||||||||||  |||||||||    
T  53202298 gtggtacttcatgatggttttcttggtggtgttgattttgg 53202258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 34227057 - 34227148
Alignment:
Q  60 gttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||||| ||||||||||    
T  34227057 gttcgcttatgaacttatatggtttcaatggatctttggttgtgttggtctgtggtacttcatggtggctttcttggtggtgctgattttgg 34227148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 23054224 - 23054363
Alignment:
Q  11 cataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagttt 110  Q
    ||||||||||||| |||| |||| ||||||| || ||| |||||||| ||||||||||||||||  ||||||||| ||||||||||||||||||| |||     
T  23054224 cataggtggtgatggatcagtcacgatggtg-tgctggatcatatctcggttcgcttatgaactgttatggtttcaatggatctttggttgtgttggttc 23054322  T
Q  111 gtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    ||||| ||| |||| ||||||| ||||||| ||||||||||    
T  23054323 gtggtgctttatggcggttttcatggtggtgctgattttgg 23054363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 53202177 - 53202118
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53202177 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 53202118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 47518662 - 47518721
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47518662 tgttgcttttaggtgagggttaatagtgatttttgtggtggtcaatggtagttttggtga 47518721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 6410122 - 6410005
Alignment:
Q  12 ataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttg 111  Q
    |||||||||||| ||||||||| || ||||| ||| | ||| ||||  |||||||||||| ||  ||||||||||||| ||||| ||||||||| |||||    
T  6410122 ataggtggtgatggatcggtcacgaaggtggcgatcgatcagatctgagttcgcttatgatctattatggtttcgatgaatcttgggttgtgttggtttg 6410023  T
Q  112 tggtacttcatggtggtt 129  Q
    |||| |||||||||||||    
T  6410022 tggtgcttcatggtggtt 6410005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 23054441 - 23054508
Alignment:
Q  228 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 296  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  23054441 ctgatgttgcttttaggtgagggttaatggtg-gttttgtggtggtcaatggtagttttggtgacgatg 23054508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 34227204 - 34227265
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 293  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  34227204 tgttgcttttaggtgagggttaatggtggttttcgtgatggtcaatggtagttttagtgatg 34227265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 12469342 - 12469407
Alignment:
Q  81 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgat 146  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||||  | ||||||| |||||    
T  12469342 gtttcgatggatccttggttgtgttggtttgtggtccttcatggtggttaccatggtggtgctgat 12469407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 45873154 - 45873102
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  45873154 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 45873102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 287
Target Start/End: Original strand, 12489216 - 12489259
Alignment:
Q  244 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 287  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  12489216 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 12489259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 12466698 - 12466746
Alignment:
Q  81 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 129  Q
    ||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  12466698 gtttcgatggatccttggttatgttggtttgtggtccttcatggtggtt 12466746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 14441167 - 14441115
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  14441167 tttttggtgaggattaatggtggtttttgtgctggttaatggtagttttggtg 14441115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 12130566 - 12130516
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttgg 288  Q
    |||| ||||||| |||||| |  ||||||||||||||||||||||||||||    
T  12130566 tttttggtgaggattaatgatagtttttgtggtggtcaatggtagttttgg 12130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 38093267 - 38093215
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||| ||||||| || |||||| ||||||||||||| | ||||||||||||||    
T  38093267 tttttggtgaggatttatggtgttttttgtggtggttattggtagttttggtg 38093215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 55728744 - 55728692
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| || ||||||||    
T  55728744 tttttggtgaggattaatggtggtttttgtggtggttaatgataattttggtg 55728692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 18697065 - 18696922
Alignment:
Q  11 cataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagttt 110  Q
    ||||||||||||| |||| |||| |||||||||||||| |||||||||||||||||||||||||  ||||| |||| |||||||||||||||||| ||||    
T  18697065 cataggtggtgatggatcagtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatgggttcggtggatctttggttgtgttggttt 18696966  T
Q  111 gtggtacttcatggtggttttcttggtggtactgattttggatc 154  Q
    ||||| |||||||| | ||||| ||||| | |||||||||||||    
T  18696965 gtggtgcttcatggcgtttttcatggtgttgctgattttggatc 18696922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 7766995 - 7767135
Alignment:
Q  11 cataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagttt 110  Q
    |||||||||||||||||||| ||  ||||||||||||| |||||||||||||| |||||||| |  ||||||||||||||||||||||||||||| ||||    
T  7766995 cataggtggtgattgatcggccacaatggtggtgatggatcatatctaggttcacttatgaattgttatggtttcgatggatctttggttgtgttggttt 7767094  T
Q  111 gtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    ||||| |||||||| || |||| |||||||  |||||||||    
T  7767095 gtggtgcttcatggcgggtttcatggtggtgttgattttgg 7767135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 41355543 - 41355630
Alignment:
Q  41 ggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 128  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41355543 ggtgatggatcatatctatgttcgctcatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtacttcatggtggt 41355630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 27170084 - 27170219
Alignment:
Q  16 gtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggt 115  Q
    |||||||| ||||||||| ||||||||| |||| |||||| | | ||  |||| |||||  ||||||||||||||||||||||||||||| |||||||||    
T  27170084 gtggtgatggatcggtcacgatggtggtaatggatcatatttggctttacttacgaactgttatggtttcgatggatctttggttgtgttggtttgtggt 27170183  T
Q  116 acttcatggtggttttcttggtggtactgattttgg 151  Q
     |||||||| ||||||| ||||||| || |||||||    
T  27170184 gcttcatggcggttttcatggtggtgctaattttgg 27170219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 38958379 - 38958442
Alignment:
Q  228 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38958379 ctgacgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 38958442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 41355722 - 41355777
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41355722 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 41355777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 38958230 - 38958301
Alignment:
Q  80 ggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||| ||||||||||    
T  38958230 ggtttcgatggatctttggttgtgttggtttgtgatacttcatggtggtttttttgatggtgctgattttgg 38958301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 7271892 - 7271826
Alignment:
Q  85 cgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  7271892 cgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 7271826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 6030388 - 6030461
Alignment:
Q  78 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    |||||||||||||||||||||||||||| ||||||||| |||| ||  ||||||| ||||||| ||||||||||    
T  6030388 atggtttcgatggatctttggttgtgttggtttgtggtgcttcctgacggttttcatggtggtgctgattttgg 6030461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 7271767 - 7271708
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    ||||||||||  |||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  7271767 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtacttttggtga 7271708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 27170275 - 27170329
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 286  Q
    |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||    
T  27170275 tgttgctttttggtgaggattaatggtggtttttgtggtggttaatggtagtttt 27170329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 26331217 - 26331269
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  26331217 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 26331269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 26656688 - 26656630
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26656688 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26656630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 26928275 - 26928217
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26928275 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26928217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 40599985 - 40600040
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 287  Q
    ||||| |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  40599985 tgttgatttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 40600040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 42221426 - 42221388
Alignment:
Q  252 taatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  42221426 taatggtgatttttgtggtggttaatggtagttttggtg 42221388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 7767203 - 7767255
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 287  Q
    |||||||||||||||||||||   |||| |||||||||||||||||| ||||||||    
T  7767203 tgttgcttttaggtgagggtt---ggtggtttttgtggtggtcaatgatagttttg 7767255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 24867205 - 24867257
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  24867205 tttttggtgaggattaatggtggtttttgtgttggttaatggtagttttggtg 24867257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 26656830 - 26656780
Alignment:
Q  78 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 128  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26656830 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26656780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 26928417 - 26928367
Alignment:
Q  78 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 128  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26928417 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26928367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 10408957 - 10408814
Alignment:
Q  11 cataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagttt 110  Q
    ||||||||||||| || |||||| |||||||||||||| ||||||||||||||||||||||  |  ||||||||||||| ||||||||||||||| ||||    
T  10408957 cataggtggtgatggaacggtcacgatggtggtgatggatcatatctaggttcgcttatgatatgttatggtttcgatgaatctttggttgtgttggttt 10408858  T
Q  111 gtggtacttcatggtggttttcttggtggtactgattttggatc 154  Q
    ||||| |||||||| ||||||  ||||||| || ||||||||||    
T  10408857 gtggtgcttcatggaggttttaatggtggtgctaattttggatc 10408814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 5994748 - 5994622
Alignment:
Q  25 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 124  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  5994748 gatcgatcatgatggtggtgatggatcatatctgggttcgcttatgaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatgg 5994649  T
Q  125 tggttttcttggtggtactgattttgg 151  Q
     ||| ||| ||||| |  |||||||||    
T  5994648 cggtattcatggtgatgttgattttgg 5994622  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 6444165 - 6444027
Alignment:
Q  13 taggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgt 112  Q
    |||||||| || ||| |||||  | ||||||||||| ||| || |  |||||| ||||| ||  ||||||||||| | ||||||| ||||||| ||||||    
T  6444165 taggtggttatggattggtcacaaaggtggtgatggatcagatatgagttcgcctatgagctgttatggtttcgaagaatctttgattgtgttggtttgt 6444066  T
Q  113 ggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    |||||||| ||||||||||| ||||||  ||||||||||    
T  6444065 ggtacttcgtggtggttttcatggtggggctgattttgg 6444027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 5994537 - 5994485
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5994537 tttttggtgagggttaatggtgatttttgtggtggttaatggtagttttggtg 5994485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 10408761 - 10408702
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||    
T  10408761 tgttgcttttaggtgagagttaatggtggtttttgtggtggtcaatggttgttttagtga 10408702  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 15050162 - 15050214
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||| ||||||| |||||| || ||||||||||||| ||||||||||||||||    
T  15050162 tttttggtgaggattaatgatggtttttgtggtggttaatggtagttttggtg 15050214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 3763045 - 3763089
Alignment:
Q  243 ggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 287  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||    
T  3763045 ggtgaggattaatgatggtttttgtggtggttaatggtagttttg 3763089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 25142954 - 25142902
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||| |||||||  || ||||||||||||||||||| |||||||||| |||||    
T  25142954 ttttcggtgaggagtagtggtgatttttgtggtggttaatggtagttgtggtg 25142902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 34118104 - 34117991
Alignment:
Q  11 cataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagttt 110  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||  |||||||||  ||||||||||||||||||  |||    
T  34118104 cataggtggtgatggatcggtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatggtttcagtggatctttggttgtgttgattt 34118005  T
Q  111 gtggtacttcatgg 124  Q
    ||||| | ||||||    
T  34118004 gtggtgcctcatgg 34117991  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 34655083 - 34654967
Alignment:
Q  38 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 137  Q
    ||||||||||| ||||||||||||||||||||||| |  |||||||| |||| ||||||| ||||||| ||||||||| |||||||| ||||||| ||||    
T  34655083 ggtggtgatggatcatatctaggttcgcttatgaaatgttatggttttgatgcatctttgattgtgttggtttgtggtgcttcatggcggttttcatggt 34654984  T
Q  138 ggtactgattttggatc 154  Q
    ||| |||||||||||||    
T  34654983 ggtgctgattttggatc 34654967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 34654889 - 34654830
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34654889 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 34654830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 26236671 - 26236781
Alignment:
Q  40 tggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtgg 139  Q
    ||||||||| ||| |||| ||||| ||||||| ||  ||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||| || |||    
T  26236671 tggtgatggatcagatctgggttcacttatgacctgttatgggttcgatggatctttggttgcgttggtttgtggtgcttcatggtggttttcatgatgg 26236770  T
Q  140 tactgattttg 150  Q
    | |||||||||    
T  26236771 tgctgattttg 26236781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 39709015 - 39709105
Alignment:
Q  38 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 128  Q
    ||||||||||| || ||||| |||||||||| |||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  39709015 ggtggtgatggatcgtatctgggttcgcttaggaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatggtggt 39709105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 615826 - 615753
Alignment:
Q  78 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||  ||||||| ||||||| |||| |||||    
T  615826 atggttttgatggatctttggttgtgttagtttgtggtgcttcatgacggttttcatggtggtgctgaatttgg 615753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 39709180 - 39709243
Alignment:
Q  228 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  39709180 ctgatatttctttttggtgagggttaatggtgatttttgtggtggttaatggtagttttcgtga 39709243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 11407975 - 11408092
Alignment:
Q  11 cataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagttt 110  Q
    |||| |||||||| |||||| || || ||||||||||| ||| || | |||| ||||||||  |  |||||||||||   ||||||||||||||| ||||    
T  11407975 cataagtggtgatggatcggccacgaaggtggtgatggatcagatatgggttagcttatgatatgttatggtttcgacaaatctttggttgtgttggttt 11408074  T
Q  111 gtggtacttcatggtggt 128  Q
    ||||| ||||||||||||    
T  11408075 gtggtgcttcatggtggt 11408092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 34117955 - 34117896
Alignment:
Q  233 gttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 293  Q
    ||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  34117955 gttgctttt-ggtgagggttaatggtggtttttgtagcggtcaatggtagttttggtgatg 34117896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 615691 - 615638
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttt 285  Q
    ||||||||||  |||| |||||||||||  |||||||| |||||||||||||||    
T  615691 tgttgctttttagtgatggttaatggtgccttttgtggcggtcaatggtagttt 615638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 11814744 - 11814695
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 287  Q
    |||| ||||||| ||||||||| |||||||| |||| |||||||||||||    
T  11814744 tttttggtgaggattaatggtggtttttgtgatggttaatggtagttttg 11814695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 2077483 - 2077531
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 286  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| |||||||    
T  2077483 tttttggtgaggattaatggtggtttttgtggtggttaatgatagtttt 2077531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 14351174 - 14351226
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||| ||||||  ||||||||| ||||||||||||| | ||||||||||||||    
T  14351174 tttttggtgagaattaatggtggtttttgtggtggttagtggtagttttggtg 14351226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 11698554 - 11698613
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11698554 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 11698613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 3302707 - 3302567
Alignment:
Q  11 cataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagttt 110  Q
    ||||||||||||| ||||| ||| ||||||||||||   |||||||||| ||||||||| ||||  ||| |||||||||||||||||||||| || || |    
T  3302707 cataggtggtgatagatcgatcacgatggtggtgatacatcatatctagattcgcttattaactgttatagtttcgatggatctttggttgtattggtat 3302608  T
Q  111 gtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    ||||| |||||||   |||||| |||||||  |||||||||    
T  3302607 gtggtgcttcatgacagttttcatggtggtgttgattttgg 3302567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 3302486 - 3302427
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 291  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||    
T  3302486 tgttgctttttggtgagtgttaatggtggtttttgtggtggtcaatggtagttttggtga 3302427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 31039052 - 31039000
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  31039052 ttttcggtgaggagtaatggtggtttttgtggtggttaatggtagttttggtg 31039000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 18269763 - 18269836
Alignment:
Q  78 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 151  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||  |||||||||    
T  18269763 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggtggttttcatggtggtgttgattttgg 18269836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 43275890 - 43275830
Alignment:
Q  232 tgttgcttttaggtgagggttaatggtgattttt-gtggtggtcaatggtagttttggtga 291  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  43275890 tgttgctttttggtgagggttaatggtggttttttgtggtggtcaatggtagttttggtga 43275830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 18269919 - 18269971
Alignment:
Q  244 gtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 296  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  18269919 gtgatggttaatggtggtttttgtggtggtcaatggaagttttggtgacgatg 18269971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 31699270 - 31699221
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 287  Q
    |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  31699270 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 31699221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 43276045 - 43275999
Alignment:
Q  77 tatggtttcgatggatctttggttgtgttagtttgtggtacttcatg 123  Q
    |||| |||||||| ||||||||||||||| ||||||||| |||||||    
T  43276045 tatgatttcgatgaatctttggttgtgttggtttgtggtgcttcatg 43275999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 31261 - 31218
Alignment:
Q  244 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 287  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  31261 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 31218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 2989 - 2938
Alignment:
Q  238 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 290  Q
    |||| |||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  2989 tttttggtgaggagtaatggtgatttt-gtggtggttaatggtagttttggtg 2938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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