View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_36 (Length: 315)
Name: NF0775_low_36
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_36 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 87 - 315
Target Start/End: Complemental strand, 8536772 - 8536541
Alignment:
| Q |
87 |
catcatcaacgatttatcgtcttaattctgcaaaaataaaaattgattgagaatgttgcagaggagcgatcaaactttaaccacccccttattatttgta |
186 |
Q |
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| T |
8536772 |
catcatcaacgatttatcgtcttaatcctgcaaaaataaaaattgattgagaatgttgcagaggagcgatcaaactttaaccacccaattattacttgta |
8536673 |
T |
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| Q |
187 |
cttccttgcgagatcaactgtnnnnnnnttccacgtagaataagaataaaaca---aattatatacgaaaaataagaagatataacacacaaaaccaatg |
283 |
Q |
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| T |
8536672 |
cttccttgcgagatcaactgtaaaaaaattccacgtagaataagaataaaacaagtaattatatacgaaaaataagaagatataacacacaaaaccaatg |
8536573 |
T |
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| Q |
284 |
gagtcgtctaaccaaggagacatctggtttct |
315 |
Q |
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| T |
8536572 |
gagtcgtctgaccaaggagacatctggtttct |
8536541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 87 - 315
Target Start/End: Complemental strand, 8602011 - 8601780
Alignment:
| Q |
87 |
catcatcaacgatttatcgtcttaattctgcaaaaataaaaattgattgagaatgttgcagaggagcgatcaaactttaaccacccccttattatttgta |
186 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
8602011 |
catcatcaacgatttatcgtcttaatcctgcaaaaataaaaattgattgagaatgttgcagaggagcgatcaaactttaaccacccaattattacttgta |
8601912 |
T |
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| Q |
187 |
cttccttgcgagatcaactgtnnnnnnnttccacgtagaataagaataaaaca---aattatatacgaaaaataagaagatataacacacaaaaccaatg |
283 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8601911 |
cttccttgcgagatcaactgtaaaaaaattccacgtagaataagaataaaacaagtaattatatacgaaaaataagaagatataacacacaaaaccaatg |
8601812 |
T |
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| Q |
284 |
gagtcgtctaaccaaggagacatctggtttct |
315 |
Q |
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||||||||| |||||||||||||||||||||| |
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| T |
8601811 |
gagtcgtctgaccaaggagacatctggtttct |
8601780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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