View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_37 (Length: 315)
Name: NF0775_low_37
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 9108496 - 9108789
Alignment:
| Q |
14 |
aacctgtggaaacatctaacgactgacccattcatataataaaacgtcggcataattgtttctcaagctgtccacgttatttttgggccccacgcgtccc |
113 |
Q |
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| T |
9108496 |
aacctatggaaacatctaacgactgacccattcatataataaaacgtcggcataattgtttctcaagctgtccacgttatttttgggccccacgcgtccc |
9108595 |
T |
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| Q |
114 |
ttcaatcttataaatagttaaatacttccacaccctttcaccaccaattcaacaacatacacactttgcattgcttcttcttgattcacaattttccact |
213 |
Q |
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| T |
9108596 |
tccaatcttataaatagttaaatatttccacaccctttcaccaccaattcaacaacatacacactttgcattgcttcttcttgattcacaattttccact |
9108695 |
T |
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| Q |
214 |
gttttaattttcaactttctctgtttctatatatagtgttgcaatggcatcatcaatgaagttttttgccttctttttcgtcgttatctctgct |
307 |
Q |
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| T |
9108696 |
gttttaattttcaactttctctgtttctatatatagtgttgcaatggcatcatcaatgaagttttttgccttctttttcgtcgttatctttgct |
9108789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 294
Target Start/End: Original strand, 8755352 - 8755563
Alignment:
| Q |
78 |
aagctgtccacgttatttttgggccccacgcgtcccttcaatcttataaatagttaaatacttccacaccctttcaccaccaat---tcaacaacataca |
174 |
Q |
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| T |
8755352 |
aagctgtccacgttatttgtgggccccacgcgtttcaccaatcttataaata--------ctcccacacactttcaccacaaataattcaaaaacataca |
8755443 |
T |
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| Q |
175 |
cactttgcattgcttcttcttgattcacaattttccactgttttaattttcaactttctctgtttctatatatagtgttgcaatggcatcatcaatgaag |
274 |
Q |
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| T |
8755444 |
taatttacatttcttcttcttgattcacaattttccactgttttaattttcaattttctctgtttccatatataattttgcaatggcatcatcaatgaag |
8755543 |
T |
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| Q |
275 |
ttttttgccttctttttcgt |
294 |
Q |
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| T |
8755544 |
tttttcgccttctttttcgt |
8755563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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