View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0775_low_41 (Length: 303)

Name: NF0775_low_41
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0775_low_41
NF0775_low_41
[»] chr1 (1 HSPs)
chr1 (116-235)||(2334929-2335048)
[»] chr5 (2 HSPs)
chr5 (116-235)||(20371693-20371812)
chr5 (116-235)||(20397417-20397536)
[»] chr2 (2 HSPs)
chr2 (116-235)||(35039010-35039129)
chr2 (114-235)||(21069241-21069364)
[»] chr6 (2 HSPs)
chr6 (121-235)||(15390396-15390510)
chr6 (1-33)||(15665416-15665448)
[»] chr3 (2 HSPs)
chr3 (114-235)||(15910159-15910280)
chr3 (114-235)||(15924402-15924523)
[»] scaffold0484 (2 HSPs)
scaffold0484 (116-235)||(10483-10602)
scaffold0484 (3-36)||(10685-10718)
[»] scaffold0094 (1 HSPs)
scaffold0094 (114-235)||(29584-29705)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-32)||(4654-4685)
[»] chr4 (2 HSPs)
chr4 (1-33)||(15567000-15567032)
chr4 (5-33)||(15579645-15579673)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 2335048 - 2334929
Alignment:
Q  116 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 215  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  2335048 tgtgaactacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttaccatgcacccacgcacccttgtcctttgaatctttgatcc 2334949  T
Q  216 tgtggtctgtgctgctcctc 235  Q
    |||||||| |||||||||||    
T  2334948 tgtggtctatgctgctcctc 2334929  T

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Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 20371812 - 20371693
Alignment:
Q  116 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 215  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||| ||||||||||    
T  20371812 tgtgaactacagcctatatatagccctctttgatcccatacgcgtgggtgtatggccttaccatgcacccacacacccttgtcctttgaatctttgatcc 20371713  T
Q  216 tgtggtctgtgctgctcctc 235  Q
    |||||||| || ||||||||    
T  20371712 tgtggtctatgttgctcctc 20371693  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 20397536 - 20397417
Alignment:
Q  116 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 215  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||| ||||||||||    
T  20397536 tgtgaactacagcctatatatagccctctttgatcccatacgcgtgggtgtatggccttaccatgcacccacacacccttgtcctttgaatctttgatcc 20397437  T
Q  216 tgtggtctgtgctgctcctc 235  Q
    |||||||| || ||||||||    
T  20397436 tgtggtctatgttgctcctc 20397417  T

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Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 116 - 235
Target Start/End: Original strand, 35039010 - 35039129
Alignment:
Q  116 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 215  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||    
T  35039010 tgtgaactacagcctatatataggcctctttgatctcatacgcgtgggtgtacggccttaccatgcacccacgcacccttgttctttgaatctttgatcc 35039109  T
Q  216 tgtggtctgtgctgctcctc 235  Q
    |||||||| || ||||||||    
T  35039110 tgtggtctatgttgctcctc 35039129  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 235
Target Start/End: Original strand, 21069241 - 21069364
Alignment:
Q  114 tctgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgatt--ctttg 211  Q
    ||||||||||||||||||||||||| |||| |||||||||| || || | |||||| ||||||||||||||||||||||||||||||||||||   ||||    
T  21069241 tctgtgaactacagcctatatataggcctctttgatcccatgcgtgtaggtgtacgaccttaccatgcacccacgcacccttgtcctttgatttgttttg 21069340  T
Q  212 atcctgtggtctgtgctgctcctc 235  Q
    |||||||||||| || ||||||||    
T  21069341 atcctgtggtctatgttgctcctc 21069364  T

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Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 15390510 - 15390396
Alignment:
Q  121 actacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcctgtgg 220  Q
    |||||||||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||     
T  15390510 actacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttaccatgcacccacgcacccttgtcctttgaatctttgatcctgtga 15390411  T
Q  221 tctgtgctgctcctc 235  Q
    ||| || ||||||||    
T  15390410 tctatgttgctcctc 15390396  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15665448 - 15665416
Alignment:
Q  1 ccggccaactgccgccggaaccccatcctttcc 33  Q
    |||||||||||||||||||||||||||||||||    
T  15665448 ccggccaactgccgccggaaccccatcctttcc 15665416  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 114 - 235
Target Start/End: Original strand, 15910159 - 15910280
Alignment:
Q  114 tctgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgat 213  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||| ||||||| ||||||||||| |||||||||| |||||||    
T  15910159 tctgtgaactacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttgccatgcatccacgcaccctggtcctttgatcctttgat 15910258  T
Q  214 cctgtggtctgtgctgctcctc 235  Q
    |||||||||| || ||||||||    
T  15910259 cctgtggtctatgttgctcctc 15910280  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 114 - 235
Target Start/End: Original strand, 15924402 - 15924523
Alignment:
Q  114 tctgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgat 213  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||| ||||| | ||||||||||| |||||||||| |||||||    
T  15924402 tctgtgaactacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttgccatggatccacgcaccctggtcctttgatcctttgat 15924501  T
Q  214 cctgtggtctgtgctgctcctc 235  Q
    |||||||||| || ||||||||    
T  15924502 cctgtggtctatgttgctcctc 15924523  T

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Target: scaffold0484 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 10602 - 10483
Alignment:
Q  116 tgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgatcc 215  Q
    ||||||||||| ||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |||||||||     
T  10602 tgtgaactacaacctatatataggcctctttgatcccatacgcgtgggtgtacggccttaccatgcacccatgcacccttgtcctttgaatctttgatct 10503  T
Q  216 tgtggtctgtgctgctcctc 235  Q
    |||||||| || ||||||||    
T  10502 tgtggtctatgttgctcctc 10483  T

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Target: scaffold0484; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 10718 - 10685
Alignment:
Q  3 ggccaactgccgccggaaccccatcctttccatc 36  Q
    ||||||| ||||||||||||||||||||||||||    
T  10718 ggccaaccgccgccggaaccccatcctttccatc 10685  T

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Target: scaffold0094 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 29705 - 29584
Alignment:
Q  114 tctgtgaactacagcctatatatagtcctccttgatcccatacgcgtggttgtacgtccttaccatgcacccacgcacccttgtcctttgattctttgat 213  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||| ||||| | ||||||||||| |||||||||| |||||||    
T  29705 tctgtgaactacagcctatatataggcctctttgatcccatacgcgtgggtgtacggccttgccatggatccacgcaccctggtcctttgatcctttgat 29606  T
Q  214 cctgtggtctgtgctgctcctc 235  Q
    |||||||||| || ||||||||    
T  29605 cctgtggtctatgttgctcctc 29584  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 4654 - 4685
Alignment:
Q  1 ccggccaactgccgccggaaccccatcctttc 32  Q
    ||||||||||||||||||||||||||||||||    
T  4654 ccggccaactgccgccggaaccccatcctttc 4685  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15567032 - 15567000
Alignment:
Q  1 ccggccaactgccgccggaaccccatcctttcc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  15567032 ccggccaactgccgccgaaaccccatcctttcc 15567000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 15579673 - 15579645
Alignment:
Q  5 ccaactgccgccggaaccccatcctttcc 33  Q
    |||||||||||||||||||||||||||||    
T  15579673 ccaactgccgccggaaccccatcctttcc 15579645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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