View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0775_low_42 (Length: 298)

Name: NF0775_low_42
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0775_low_42
NF0775_low_42
[»] scaffold0004 (6 HSPs)
scaffold0004 (160-237)||(67250-67327)
scaffold0004 (181-236)||(67165-67220)
scaffold0004 (181-233)||(67211-67263)
scaffold0004 (181-236)||(67120-67177)
scaffold0004 (181-236)||(74544-74601)
scaffold0004 (181-221)||(65077-65117)
[»] scaffold0056 (7 HSPs)
scaffold0056 (160-236)||(15360-15436)
scaffold0056 (181-236)||(15424-15480)
scaffold0056 (181-236)||(15644-15700)
scaffold0056 (181-236)||(15512-15568)
scaffold0056 (181-236)||(15556-15612)
scaffold0056 (181-236)||(15600-15656)
scaffold0056 (183-236)||(15470-15524)
[»] chr1 (21 HSPs)
chr1 (160-235)||(6833190-6833265)
chr1 (160-236)||(21350492-21350569)
chr1 (160-236)||(12709577-12709653)
chr1 (179-234)||(21350450-21350506)
chr1 (181-221)||(45495992-45496032)
chr1 (181-221)||(22825703-22825743)
chr1 (184-236)||(51323327-51323381)
chr1 (181-236)||(6833254-6833311)
chr1 (160-220)||(12709912-12709972)
chr1 (203-236)||(12709971-12710004)
chr1 (184-221)||(18120569-18120606)
chr1 (184-220)||(28477727-28477763)
chr1 (184-236)||(22825796-22825850)
chr1 (184-221)||(7321946-7321983)
chr1 (160-201)||(22825922-22825963)
chr1 (161-201)||(35261345-35261386)
chr1 (160-201)||(39060095-39060136)
chr1 (181-216)||(6833299-6833335)
chr1 (163-199)||(7053147-7053183)
chr1 (163-199)||(14238637-14238673)
chr1 (184-236)||(35088483-35088535)
[»] chr7 (26 HSPs)
chr7 (162-236)||(4691794-4691868)
chr7 (181-236)||(13745999-13746055)
chr7 (181-236)||(14153914-14153970)
chr7 (181-236)||(13746043-13746099)
chr7 (181-236)||(13746087-13746143)
chr7 (181-236)||(13746175-13746231)
chr7 (181-236)||(14153958-14154014)
chr7 (181-236)||(15120263-15120318)
chr7 (183-236)||(14154002-14154056)
chr7 (160-236)||(11314185-11314261)
chr7 (181-233)||(13746134-13746187)
chr7 (187-236)||(15120306-15120355)
chr7 (184-221)||(24270822-24270859)
chr7 (184-221)||(25941353-25941390)
chr7 (180-235)||(20253599-20253654)
chr7 (184-236)||(22001226-22001280)
chr7 (163-201)||(43747354-43747392)
chr7 (184-221)||(8136091-8136128)
chr7 (185-233)||(11314144-11314193)
chr7 (184-221)||(24270867-24270904)
chr7 (184-221)||(43747417-43747454)
chr7 (162-199)||(13699816-13699853)
chr7 (184-221)||(15096688-15096725)
chr7 (184-221)||(15139107-15139144)
chr7 (185-221)||(25941309-25941345)
chr7 (163-199)||(48809592-48809628)
[»] chr4 (10 HSPs)
chr4 (162-236)||(45315317-45315391)
chr4 (161-237)||(17958270-17958346)
chr4 (181-236)||(45315273-45315329)
chr4 (181-236)||(25512539-25512595)
chr4 (184-233)||(44024480-44024529)
chr4 (184-220)||(19566997-19567033)
chr4 (181-235)||(17958333-17958388)
chr4 (184-221)||(26922726-26922763)
chr4 (162-199)||(40229398-40229435)
chr4 (163-199)||(19734253-19734289)
[»] chr8 (23 HSPs)
chr8 (160-236)||(5079923-5079998)
chr8 (181-233)||(6574019-6574071)
chr8 (185-233)||(22207242-22207290)
chr8 (184-221)||(22318929-22318966)
chr8 (184-221)||(22344083-22344120)
chr8 (184-221)||(22355743-22355780)
chr8 (184-221)||(22482894-22482931)
chr8 (184-220)||(17979504-17979540)
chr8 (187-234)||(6574061-6574108)
chr8 (160-203)||(6574173-6574216)
chr8 (160-199)||(18820118-18820157)
chr8 (160-201)||(22343992-22344033)
chr8 (160-201)||(22355652-22355693)
chr8 (160-201)||(22482781-22482822)
chr8 (163-199)||(13665564-13665600)
chr8 (163-199)||(13724839-13724875)
chr8 (184-220)||(21513314-21513350)
chr8 (163-203)||(22207095-22207135)
chr8 (184-236)||(24713187-24713239)
chr8 (163-199)||(27472755-27472791)
chr8 (163-199)||(36728427-36728463)
chr8 (163-203)||(38988225-38988265)
chr8 (163-203)||(39019322-39019362)
[»] chr3 (21 HSPs)
chr3 (156-234)||(50352145-50352224)
chr3 (163-236)||(53646937-53647010)
chr3 (156-236)||(12540219-12540298)
chr3 (183-236)||(12540288-12540342)
chr3 (181-221)||(9512061-9512101)
chr3 (181-221)||(9520036-9520076)
chr3 (181-236)||(12540330-12540386)
chr3 (186-221)||(22842628-22842663)
chr3 (181-235)||(50352100-50352155)
chr3 (181-236)||(53646894-53646949)
chr3 (181-219)||(22842675-22842713)
chr3 (184-236)||(50756353-50756407)
chr3 (184-221)||(1208983-1209020)
chr3 (160-201)||(24545555-24545596)
chr3 (160-201)||(50756457-50756498)
chr3 (163-203)||(6145941-6145981)
chr3 (163-199)||(9644367-9644403)
chr3 (163-199)||(15448082-15448118)
chr3 (163-199)||(20417034-20417070)
chr3 (163-199)||(37037773-37037809)
chr3 (167-199)||(42327418-42327450)
[»] scaffold0230 (4 HSPs)
scaffold0230 (160-236)||(7925-8001)
scaffold0230 (181-236)||(7793-7849)
scaffold0230 (185-236)||(7837-7889)
scaffold0230 (181-236)||(7881-7937)
[»] scaffold0174 (8 HSPs)
scaffold0174 (160-236)||(14959-15034)
scaffold0174 (181-233)||(15022-15075)
scaffold0174 (181-236)||(15066-15122)
scaffold0174 (160-236)||(3890-3967)
scaffold0174 (160-236)||(10012-10089)
scaffold0174 (181-235)||(3955-4010)
scaffold0174 (181-235)||(10077-10132)
scaffold0174 (181-216)||(15110-15146)
[»] chr2 (12 HSPs)
chr2 (162-236)||(45679343-45679418)
chr2 (160-236)||(22685669-22685746)
chr2 (181-237)||(25085473-25085529)
chr2 (181-236)||(45679473-45679528)
chr2 (181-232)||(45679406-45679458)
chr2 (181-233)||(22685734-22685787)
chr2 (181-233)||(22685822-22685875)
chr2 (181-236)||(45679516-45679572)
chr2 (183-236)||(22685780-22685834)
chr2 (187-236)||(25085436-25085485)
chr2 (160-201)||(25587825-25587866)
chr2 (181-236)||(22685866-22685922)
[»] chr6 (12 HSPs)
chr6 (160-236)||(29044183-29044260)
chr6 (180-236)||(29044247-29044304)
chr6 (181-237)||(12419564-12419621)
chr6 (181-237)||(12420025-12420082)
chr6 (184-221)||(19234371-19234408)
chr6 (180-221)||(30674408-30674449)
chr6 (184-236)||(18458139-18458190)
chr6 (184-220)||(21680852-21680888)
chr6 (184-221)||(6083761-6083798)
chr6 (160-201)||(19234280-19234321)
chr6 (184-221)||(25920617-25920654)
chr6 (184-221)||(25920662-25920699)
[»] scaffold0123 (1 HSPs)
scaffold0123 (184-236)||(15942-15994)
[»] scaffold0051 (2 HSPs)
scaffold0051 (181-236)||(64984-65039)
scaffold0051 (187-233)||(65030-65076)
[»] chr5 (12 HSPs)
chr5 (185-236)||(16062407-16062458)
chr5 (181-236)||(16062446-16062502)
chr5 (181-236)||(21401972-21402028)
chr5 (184-236)||(26749004-26749057)
chr5 (181-236)||(21401928-21401984)
chr5 (184-221)||(20198757-20198794)
chr5 (184-221)||(22110769-22110806)
chr5 (184-236)||(26761445-26761496)
chr5 (160-203)||(8834282-8834325)
chr5 (187-233)||(8834170-8834216)
chr5 (160-201)||(26748938-26748979)
chr5 (163-199)||(20470228-20470264)
[»] scaffold0462 (4 HSPs)
scaffold0462 (163-235)||(326-398)
scaffold0462 (163-235)||(5832-5904)
scaffold0462 (181-236)||(387-442)
scaffold0462 (181-236)||(5893-5948)
[»] scaffold0379 (5 HSPs)
scaffold0379 (181-221)||(9618-9658)
scaffold0379 (181-221)||(16810-16850)
scaffold0379 (160-201)||(9487-9528)
scaffold0379 (160-201)||(16679-16720)
scaffold0379 (163-199)||(4885-4921)
[»] scaffold0125 (2 HSPs)
scaffold0125 (181-236)||(27308-27364)
scaffold0125 (181-220)||(24632-24672)
[»] scaffold0048 (2 HSPs)
scaffold0048 (184-236)||(56063-56115)
scaffold0048 (163-203)||(55919-55959)
[»] scaffold0112 (2 HSPs)
scaffold0112 (184-221)||(1851-1888)
scaffold0112 (184-221)||(1806-1843)
[»] scaffold0100 (4 HSPs)
scaffold0100 (184-221)||(27614-27651)
scaffold0100 (184-217)||(10231-10264)
scaffold0100 (160-201)||(10314-10355)
scaffold0100 (184-221)||(27659-27696)
[»] scaffold0371 (1 HSPs)
scaffold0371 (184-236)||(11281-11333)
[»] scaffold0369 (3 HSPs)
scaffold0369 (181-221)||(17066-17106)
scaffold0369 (185-236)||(16960-17013)
scaffold0369 (181-221)||(17155-17195)
[»] scaffold0059 (1 HSPs)
scaffold0059 (184-221)||(49039-49076)
[»] scaffold0003 (1 HSPs)
scaffold0003 (181-236)||(95294-95349)
[»] scaffold0401 (1 HSPs)
scaffold0401 (184-230)||(7906-7952)
[»] scaffold0134 (1 HSPs)
scaffold0134 (163-201)||(10318-10356)
[»] scaffold0520 (1 HSPs)
scaffold0520 (184-221)||(424-461)
[»] scaffold0505 (1 HSPs)
scaffold0505 (160-201)||(1659-1700)
[»] scaffold0261 (1 HSPs)
scaffold0261 (184-221)||(7485-7522)
[»] scaffold0213 (1 HSPs)
scaffold0213 (160-201)||(18072-18113)
[»] scaffold0017 (1 HSPs)
scaffold0017 (160-201)||(25470-25511)
[»] scaffold1815 (1 HSPs)
scaffold1815 (163-199)||(940-976)
[»] scaffold1633 (1 HSPs)
scaffold1633 (184-236)||(284-336)
[»] scaffold1351 (1 HSPs)
scaffold1351 (184-236)||(1382-1434)
[»] scaffold0630 (1 HSPs)
scaffold0630 (163-199)||(8013-8049)
[»] scaffold0178 (1 HSPs)
scaffold0178 (163-203)||(283-323)
[»] scaffold0083 (1 HSPs)
scaffold0083 (163-199)||(7913-7949)
[»] scaffold0071 (1 HSPs)
scaffold0071 (163-199)||(14071-14107)
[»] scaffold0001 (1 HSPs)
scaffold0001 (184-236)||(76717-76769)


Alignment Details
Target: scaffold0004 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 67327 - 67250
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcca 237  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  67327 aatatgcatgtggtaccaatttgagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcca 67250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 67220 - 67165
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||    
T  67220 agagcatcaatccctctactttatatgaatgattatacattccagagcatcaagcc 67165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 67263 - 67211
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaa 233  Q
    ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  67263 agagcatcaagccatcaactttaaatgaatgattatacattccagagcatcaa 67211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 67177 - 67120
Alignment:
Q  181 agagcatcaagccctcaacttta--tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| ||||||  |||||||||||||||||| || |||||||||||    
T  67177 agagcatcaagccctctactttaaatatgaatgattatacattccaaagcatcaagcc 67120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 74544 - 74601
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatt--tcagagcatcaagcc 236  Q
    ||||||||||||||||||| |  ||||||||||||||||||   ||||||||||||||    
T  74544 agagcatcaagccctcaacgtggtatgaatgattatacattcaacagagcatcaagcc 74601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 65077 - 65117
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||||||||||| |  ||||||||||||||||||    
T  65077 agagcatcaagccctcaacgtggtatgaatgattatacatt 65117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 15360 - 15436
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15360 aatatgcatgtggtaccaatcagagcatcaagccctcaactttatatgaatgattatacattccagagcatcaagcc 15436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 15424 - 15480
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||    
T  15424 agagcatcaagccctcaactttaatatgaatgattatacatttaaaagcatcaagcc 15480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 15644 - 15700
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  15644 agagcatcaagccctctactttaatatgaatgattatacattccagagcatcaagcc 15700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 15512 - 15568
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  15512 agagcttcaagccctctactttaatatgaatgattatacattccagagcatcaagcc 15568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 15556 - 15612
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||||    
T  15556 agagcatcaagccctctactttactatgaataattatacattccagagcatcaagcc 15612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 15600 - 15656
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| |||||| |||||||||||||||| | ||||||||||||||    
T  15600 agagcatcaagccctctactttaatatgaatgattatacaatccagagcatcaagcc 15656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 15470 - 15524
Alignment:
Q  183 agcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||| |||||| ||||||||||||||||||  ||||| |||||||    
T  15470 agcatcaagccctctactttaatatgaatgattatacattcgagagcttcaagcc 15524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 6833190 - 6833265
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagc 235  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  6833190 aatatgcatgtggtaccaatcagagcatcaagccctcaactttaaatgaatgattatacattccagagcatcaagc 6833265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 21350569 - 21350492
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaacttt-atatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  21350569 aatatgcatgtggtaccaatcagagcattaagccctcaactttaatatgaatgattatacattttagagcatcaagcc 21350492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 12709577 - 12709653
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||| ||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  12709577 aatatgtatgtggtacca-tcagagcatcaagccctcaactttaatatgaatgattatacattccagagcatcaagcc 12709653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 21350506 - 21350450
Alignment:
Q  179 ttagagcatcaagccctcaacttt-atatgaatgattatacatttcagagcatcaag 234  Q
    |||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||    
T  21350506 ttagagcatcaagccctcaactttaatatgaatgattattcattccagagcatcaag 21350450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 45495992 - 45496032
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatt 221  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  45495992 agagcatcaagccctcaactttatatgaatgattatacatt 45496032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 22825743 - 22825703
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatt 221  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  22825743 agagcatcaagcccccaactttatatgaatgattatacatt 22825703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 51323327 - 51323381
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt--tcagagcatcaagcc 236  Q
    |||||||||||||||||| |||||||||||||||||||   ||||||||||||||    
T  51323327 gcatcaagccctcaacttaatatgaatgattatacattcaacagagcatcaagcc 51323381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 6833254 - 6833311
Alignment:
Q  181 agagcatcaagccctcaacttta--tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||| ||| ||||||  |||||||||||||||||| ||||||||||||||    
T  6833254 agagcatcaagctctctactttaaatatgaatgattatacattccagagcatcaagcc 6833311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 12709912 - 12709972
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaacttt-atatgaatgattatacat 220  Q
    |||||| ||||||||||| | |||||||||| ||||||||||| ||||||||||||||||||    
T  12709912 aatatgtatgtggtacca-tcagagcatcaaaccctcaactttaatatgaatgattatacat 12709972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 12709971 - 12710004
Alignment:
Q  203 atatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||||||||||||||||||||||||    
T  12709971 atatgaatgattatacatttcagagcatcaagcc 12710004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 18120569 - 18120606
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    |||||||||||||||||| |||||||||||||||||||    
T  18120569 gcatcaagccctcaacttaatatgaatgattatacatt 18120606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 28477763 - 28477727
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacat 220  Q
    |||||||||||||||||| ||||||||||||||||||    
T  28477763 gcatcaagccctcaacttaatatgaatgattatacat 28477727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 22825850 - 22825796
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt--tcagagcatcaagcc 236  Q
    |||| |||||| ||||||||||||||||||||||||||   ||||||||||||||    
T  22825850 gcattaagcccccaactttatatgaatgattatacattcaacagagcatcaagcc 22825796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 7321983 - 7321946
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  7321983 gcatcaagcccccaacttaatatgaatgattatacatt 7321946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 22825963 - 22825922
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  22825963 aatatgcatgtggtaccaatcagggcatcaagcccccaactt 22825922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 35261386 - 35261345
Alignment:
Q  161 atatgcatgtggtaccaat-tagagcatcaagccctcaactt 201  Q
    ||||||||||||||||||| ||| ||||||||||||||||||    
T  35261386 atatgcatgtggtaccaatctagggcatcaagccctcaactt 35261345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 39060095 - 39060136
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  39060095 aatatgcatgtggtaccaataagggcatcaagcccccaactt 39060136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 6833299 - 6833335
Alignment:
Q  181 agagcatcaagccctcaacttt-atatgaatgattat 216  Q
    |||||||||||||||||||||| ||||||||||||||    
T  6833299 agagcatcaagccctcaactttaatatgaatgattat 6833335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 7053183 - 7053147
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    ||||||||||||||||  |||||||||||||||||||    
T  7053183 atgcatgtggtaccaaccagagcatcaagccctcaac 7053147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 14238673 - 14238637
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    ||||||||||||||||| || ||||||||||||||||    
T  14238673 atgcatgtggtaccaatcagggcatcaagccctcaac 14238637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 35088483 - 35088535
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| | ||||| || | |||||||| ||||||||||||||    
T  35088483 gcatcaagccctcaacataatatgtataaatatacattacagagcatcaagcc 35088535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 4691868 - 4691794
Alignment:
Q  162 tatgcatgtggtaccaattagagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  4691868 tatgcatgtggtaccaatcagggcatcaagcccccaactttatatgaatgattatacattccagagcatcaagcc 4691794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 13746055 - 13745999
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  13746055 agagcatcaagccctcaactttaatatgaatgattatacattccagagcatcaagcc 13745999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 14153970 - 14153914
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  14153970 agagcatcaagccctcaactttagtatgaatgattatacattccagagcatcaagcc 14153914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 13746099 - 13746043
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||    
T  13746099 agagcatcaagccctcaactttaatatgaatgattatatattccagagcatcaagcc 13746043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 13746143 - 13746087
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||    
T  13746143 agagcatcaatccctcaactttaatatgaatgattatacattccagagcatcaagcc 13746087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 13746231 - 13746175
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||    
T  13746231 agagcatcaagccttcaactttaatatgaatgattatacattccagagcatcaagcc 13746175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 14154014 - 14153958
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  14154014 agagcatcaagccctgaactttaatatgaatgattatacattccagagcatcaagcc 14153958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 15120318 - 15120263
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||||||||||||  ||||||||||||| ||| ||||||||||||||    
T  15120318 agagcatcaagccctcaactttgaatgaatgattataaattccagagcatcaagcc 15120263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 14154056 - 14154002
Alignment:
Q  183 agcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||    
T  14154056 agcatcaagccttcaactttaatatgaatgattatacattccagagcatcaagcc 14154002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 11314261 - 11314185
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||| ||||||||||| | |||||||||| || ||||||||| |||||||||||||||||| |||| |||||||||    
T  11314261 aatatgtatgtggtacca-tcagagcatcaaaccttcaactttaatatgaatgattatacattccagaacatcaagcc 11314185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 13746187 - 13746134
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaa 233  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||||||||||    
T  13746187 agagcatcaagccctcaactttaatatgaatgattatatattccagagcatcaa 13746134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 15120355 - 15120306
Alignment:
Q  187 tcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  15120355 tcaagcccccaactttaaatgaatgattatacattccagagcatcaagcc 15120306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 24270859 - 24270822
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24270859 gcatcaagccctcaactttatatgaatgattatacatt 24270822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 25941353 - 25941390
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25941353 gcatcaagccctcaactttatatgaatgattatacatt 25941390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 20253654 - 20253599
Alignment:
Q  180 tagagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagc 235  Q
    |||| |||||| |||||||||| ||||| || ||||||||||||||||||||||||    
T  20253654 tagatcatcaaaccctcaacttaatatgtataattatacatttcagagcatcaagc 20253599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 22001280 - 22001226
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt--tcagagcatcaagcc 236  Q
    |||||||||||||||||| |||||||||||||||||||   ||||||||||||||    
T  22001280 gcatcaagccctcaacttaatatgaatgattatacattcaacagagcatcaagcc 22001226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 43747354 - 43747392
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  43747354 atgcatgtggtaccaattagagcatcaagcccccaactt 43747392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 8136128 - 8136091
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8136128 gcatcaagccctcaacttaatatgaatgattatacatt 8136091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 11314193 - 11314144
Alignment:
Q  185 catcaagccctcaacttta-tatgaatgattatacatttcagagcatcaa 233  Q
    |||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  11314193 catcaagccctctactttaatatgaatgattatacattccagagcatcaa 11314144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 24270904 - 24270867
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  24270904 gcatcaagcccccaactttatatgaatgattatacatt 24270867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 43747417 - 43747454
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    |||||||||||||||||| |||||||||||||||||||    
T  43747417 gcatcaagccctcaacttaatatgaatgattatacatt 43747454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 13699853 - 13699816
Alignment:
Q  162 tatgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    |||||||||||||||||  |||||||||||||||||||    
T  13699853 tatgcatgtggtaccaaccagagcatcaagccctcaac 13699816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 15096725 - 15096688
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  15096725 gcatcaagcccttaacttaatatgaatgattatacatt 15096688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 15139107 - 15139144
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  15139107 gcatcaagccctcaacttaatatgaaggattatacatt 15139144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 25941309 - 25941345
Alignment:
Q  185 catcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||| || ||||||||||||||||||||||||||    
T  25941309 catcaagtccccaactttatatgaatgattatacatt 25941345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 48809628 - 48809592
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  48809628 atgcatgtggtaccaatcagagcatcaagcccccaac 48809592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 45315391 - 45315317
Alignment:
Q  162 tatgcatgtggtaccaattagagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  45315391 tatgcatgtggtaccaatcagggcatcaagcccccaactttatatgaatgattatacattccagagcatcaagcc 45315317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 17958270 - 17958346
Alignment:
Q  161 atatgcatgtggtaccaattagagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcca 237  Q
    ||||| ||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  17958270 atatgtatgtggtacca-tcagagcatcaagccctcaactttaatatgaatgattatacattccagagcatcaagcca 17958346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 45315329 - 45315273
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||||||||||||| |||||||||||||||||| || |||||||||||    
T  45315329 agagcatcaagccctcaactttaatatgaatgattatacattccatagcatcaagcc 45315273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 25512539 - 25512595
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||| |||||||||||||||||| ||||||||| |||||||| ||||||||||||||    
T  25512539 agagaatcaagccctcaactttaatatgaatgaatatacattccagagcatcaagcc 25512595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 44024529 - 44024480
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatttcagagcatcaa 233  Q
    ||||||| ||| |||||||| ||||||||||||||||| |||||||||||    
T  44024529 gcatcaaacccccaactttaaatgaatgattatacattccagagcatcaa 44024480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 19567033 - 19566997
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacat 220  Q
    |||||||||||||||||| ||||||||||||||||||    
T  19567033 gcatcaagccctcaacttaatatgaatgattatacat 19566997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 17958333 - 17958388
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagc 235  Q
    ||||||||||||| || | |||| |||||||||||||||||| |||||||||||||    
T  17958333 agagcatcaagccatctagtttaatatgaatgattatacattccagagcatcaagc 17958388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 26922763 - 26922726
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  26922763 gcatcaaaccctcaacttaatatgaatgattatacatt 26922726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 40229398 - 40229435
Alignment:
Q  162 tatgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  40229398 tatgcatttggtaccaatcagagcatcaagccctcaac 40229435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 19734253 - 19734289
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  19734253 atgcatgtggtaccaactagggcatcaagccctcaac 19734289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 5079923 - 5079998
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  5079923 aatatgcatgtagtaccaatcagagcatcaaaccctcaacttta-atgaatgattatacatttcagagcatcaagcc 5079998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 6574071 - 6574019
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaa 233  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  6574071 agagcatcaagtcctcaactttaaatgaatgattatacattccagagcatcaa 6574019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 22207242 - 22207290
Alignment:
Q  185 catcaagccctcaactttatatgaatgattatacatttcagagcatcaa 233  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  22207242 catcaagccctcaactttaaatgaatgattatacattccagagcatcaa 22207290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 22318966 - 22318929
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    |||||||||||||||||| |||||||||||||||||||    
T  22318966 gcatcaagccctcaacttaatatgaatgattatacatt 22318929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 22344083 - 22344120
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  22344083 gcatcaagcccccaactttatatgaatgattatacatt 22344120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 22355743 - 22355780
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  22355743 gcatcaagcccccaactttatatgaatgattatacatt 22355780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 22482894 - 22482931
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  22482894 gcatcaagcccccaactttatatgaatgattatacatt 22482931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 17979540 - 17979504
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacat 220  Q
    |||||||||||||||||| ||||||||||||||||||    
T  17979540 gcatcaagccctcaacttaatatgaatgattatacat 17979504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 6574108 - 6574061
Alignment:
Q  187 tcaagccctcaactttatatgaatgattatacatttcagagcatcaag 234  Q
    |||| ||| |||||||| ||||||||||||| ||||||||||||||||    
T  6574108 tcaaacccccaactttaaatgaatgattataaatttcagagcatcaag 6574061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 6574216 - 6574173
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaacttta 203  Q
    |||||||||||||||||||| || ||||||||||| ||||||||    
T  6574216 aatatgcatgtggtaccaatcagggcatcaagcccccaacttta 6574173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 18820157 - 18820118
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  18820157 aatatgcatgtggtaccaatcagagcatcaagcccccaac 18820118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 22343992 - 22344033
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  22343992 aatatgcatgtggtaccaatcagggcatcaagcccccaactt 22344033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 22355652 - 22355693
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  22355652 aatatgcatgtggtaccaatcagggcatcaagcccccaactt 22355693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 22482781 - 22482822
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  22482781 aatatgcatgtggtaccaatcagggcatcaagcccccaactt 22482822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 13665600 - 13665564
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    ||||||||||||||||  |||||||||||||||||||    
T  13665600 atgcatgtggtaccaaccagagcatcaagccctcaac 13665564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 13724875 - 13724839
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    ||||||||||||||||  |||||||||||||||||||    
T  13724875 atgcatgtggtaccaaccagagcatcaagccctcaac 13724839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 21513314 - 21513350
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacat 220  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  21513314 gcatcaagccctcaccttaatatgaatgattatacat 21513350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 22207095 - 22207135
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaacttta 203  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  22207095 atgcatgtggtaccaatcagggcatcaagcccccaacttta 22207135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 24713187 - 24713239
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| | ||||| || | |||||||| ||||||||||||||    
T  24713187 gcatcaagccctcaacataatatgtataaatatacattacagagcatcaagcc 24713239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 27472791 - 27472755
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  27472791 atgcatgtggtaccaactagagcatcaagcccccaac 27472755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 36728463 - 36728427
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    ||||||||||||||||  |||||||||||||||||||    
T  36728463 atgcatgtggtaccaaccagagcatcaagccctcaac 36728427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 38988225 - 38988265
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaacttta 203  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  38988225 atgcatgtggtaccaatcagggcatcaagcccccaacttta 38988265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 39019322 - 39019362
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaacttta 203  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  39019322 atgcatgtggtaccaatcagggcatcaagcccccaacttta 39019362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 50352224 - 50352145
Alignment:
Q  156 atgtaatatgcatgtggtaccaattagagcatcaagccctcaacttt-atatgaatgattatacatttcagagcatcaag 234  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||||||| ||||||||||||    
T  50352224 atgtaatatgcatgtggtaccaatcagagcatcaagccctcaactttaatatgaattgttatacattccagagcatcaag 50352145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 53647010 - 53646937
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||||||  || ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  53647010 atgcatgtggtaccaaccagggcatcaagcccccaactttaaatgaatgattatacattccagagcatcaagcc 53646937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 12540219 - 12540298
Alignment:
Q  156 atgtaatatgcatgtggtaccaattagagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||||||||||| || ||||||| ||| |||| ||||||||||||||||||||| || |||||||||||    
T  12540219 atgtaatatgcatgtggtaccaatcagggcatcaaacccccaac-ttatatgaatgattatacattccaaagcatcaagcc 12540298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 12540288 - 12540342
Alignment:
Q  183 agcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  12540288 agcatcaagccctcaactttaatatgaatgattatacattccagagcatcaagcc 12540342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 9512101 - 9512061
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  9512101 agagcatcaagccctcaacttgatatgaatgattatacatt 9512061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 9520076 - 9520036
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  9520076 agagcatcaagccctcaacttgatatgaatgattatacatt 9520036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 12540330 - 12540386
Alignment:
Q  181 agagcatcaagccctcaactttat-atgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||||||||||  ||||||||||||||||| || |||||||||||    
T  12540330 agagcatcaagccctcaactttaacatgaatgattatacattccaaagcatcaagcc 12540386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 22842663 - 22842628
Alignment:
Q  186 atcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  22842663 atcaagccctcaactttatatgaatgattatacatt 22842628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 50352155 - 50352100
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagc 235  Q
    ||||||||||| |||| |||||| |||||||||||||||||| |||||||||||||    
T  50352155 agagcatcaagacctctactttaatatgaatgattatacattccagagcatcaagc 50352100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 53646949 - 53646894
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||||||| ||||| ||||||||||||||| |  |||||||||||||    
T  53646949 agagcatcaagccctcagctttaaatgaatgattatacaatctagagcatcaagcc 53646894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 22842713 - 22842675
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattataca 219  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  22842713 agagcatcaagcccccaactttatatgaatgattataca 22842675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 50756407 - 50756353
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt--tcagagcatcaagcc 236  Q
    ||||||||||| || |||||||||||||||||||||||   ||||||||||||||    
T  50756407 gcatcaagcccccagctttatatgaatgattatacattcaacagagcatcaagcc 50756353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 1209020 - 1208983
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  1209020 gcatcaagcccccaactttatatgaatgtttatacatt 1208983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 24545555 - 24545596
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  24545555 aatatgcatgtggtaccaatcagggcatcaagcccccaactt 24545596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 50756498 - 50756457
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  50756498 aatatgcatgtggtaccaatcagggcatcaagcccccaactt 50756457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 6145941 - 6145981
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaacttta 203  Q
    |||||||||||||||||||| | ||||||||| ||||||||    
T  6145941 atgcatgtggtaccaattaggggatcaagcccccaacttta 6145981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 9644367 - 9644403
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    ||||||||||||||||  |||||||||||||||||||    
T  9644367 atgcatgtggtaccaaacagagcatcaagccctcaac 9644403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 15448118 - 15448082
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  15448118 atgcatgtggtaccaactagggcatcaagccctcaac 15448082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 20417034 - 20417070
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    ||||||||||||||||  |||||||||||||||||||    
T  20417034 atgcatgtggtaccaaccagagcatcaagccctcaac 20417070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 37037773 - 37037809
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    ||||||||||||||||  |||||||||||||||||||    
T  37037773 atgcatgtggtaccaaccagagcatcaagccctcaac 37037809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 42327450 - 42327418
Alignment:
Q  167 atgtggtaccaattagagcatcaagccctcaac 199  Q
    ||||||||||||| |||||||||||||||||||    
T  42327450 atgtggtaccaatcagagcatcaagccctcaac 42327418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 8001 - 7925
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||| ||||||||||| |||||||||| |||||||||| | ||||||||||||||||| ||||||||||||||    
T  8001 aatatgcacgtggtaccaatcagagcatcaatccctcaacttgaaatgaatgattatacattccagagcatcaagcc 7925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 7849 - 7793
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| |||||| ||||||||||||||||||  ||| |||||||||    
T  7849 agagcatcaagccctctactttaatatgaatgattatacattctagatcatcaagcc 7793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 7889 - 7837
Alignment:
Q  185 catcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||| |||||| |||||||||||||| ||| ||||||||||||||    
T  7889 catcaagccctctactttaatatgaatgattatatattccagagcatcaagcc 7837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 7937 - 7881
Alignment:
Q  181 agagcatcaagccctcaacttt-atatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| ||||| |||||||||||||| |||| || | |||||||||    
T  7937 agagcatcaagccctctactttaatatgaatgattattcattccaaaacatcaagcc 7881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 14959 - 15034
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||||||| || ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  14959 aatatgcatgtggtaccaatcagggcatcaagcccccaactt-atatgaatgattatacattccagagcatcaagcc 15034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 15022 - 15075
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaa 233  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  15022 agagcatcaagccctcaactttaatatgaatgattatacattccagagcatcaa 15075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 15066 - 15122
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||    
T  15066 agagcatcaaaccctcaactttaatatgaatgattatacattccagagcatcaagcc 15122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 3890 - 3967
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactttatatgaatgattatacatt--tcagagcatcaagcc 236  Q
    |||||||||||||||||||| || |||||||||||  ||||||| |||||||||||||||||   ||||||||||||||    
T  3890 aatatgcatgtggtaccaatcagggcatcaagcccctaacttta-atgaatgattatacattcaacagagcatcaagcc 3967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 10012 - 10089
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactttatatgaatgattatacatt--tcagagcatcaagcc 236  Q
    |||||||||||||||||||| || |||||||||||  ||||||| |||||||||||||||||   ||||||||||||||    
T  10012 aatatgcatgtggtaccaatcagggcatcaagcccctaacttta-atgaatgattatacattcaacagagcatcaagcc 10089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 3955 - 4010
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatt--tcagagcatcaagc 235  Q
    ||||||||||||||||||||||| |||||||||||||||||   |||||||||||||    
T  3955 agagcatcaagccctcaacttta-atgaatgattatacattcaacagagcatcaagc 4010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 10077 - 10132
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatt--tcagagcatcaagc 235  Q
    ||||||||||||||||||||||| |||||||||||||||||   |||||||||||||    
T  10077 agagcatcaagccctcaacttta-atgaatgattatacattcaacagagcatcaagc 10132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 15110 - 15146
Alignment:
Q  181 agagcatcaagccctcaacttt-atatgaatgattat 216  Q
    |||||||||||||||||||||| ||||||||||||||    
T  15110 agagcatcaagccctcaactttaatatgaatgattat 15146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 45679343 - 45679418
Alignment:
Q  162 tatgcatgtggtaccaattagagcatcaagccctcaacttt-atatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||| |||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  45679343 tatgcatgtagtaccaatcagagcatcaacccctcaactttaatatgaatgattatacattccagagcatcaagcc 45679418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 22685669 - 22685746
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaacttt-atatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||| ||| ||||||||||||||    
T  22685669 aatatccatgtggtaccaatcagagcatcaagcgctcaactttaatatgaatgattatatattccagagcatcaagcc 22685746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 25085473 - 25085529
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcca 237  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  25085473 agagcatcaagccctcaactttaaatgaatgattatacattccagagcatcaagcca 25085529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 45679473 - 45679528
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  45679473 agagcatcaagccctcaactttaaatgaatgattatacattccagagcatcaagcc 45679528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 45679406 - 45679458
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatca 232  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  45679406 agagcatcaagccctcaactttaatatgaatgattatacattccagagcatca 45679458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 22685734 - 22685787
Alignment:
Q  181 agagcatcaagccctcaacttt-atatgaatgattatacatttcagagcatcaa 233  Q
    |||||||||||||||||||||| ||||||||||||||||||| || ||||||||    
T  22685734 agagcatcaagccctcaactttaatatgaatgattatacattccaaagcatcaa 22685787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 22685822 - 22685875
Alignment:
Q  181 agagcatcaagccctcaacttt-atatgaatgattatacatttcagagcatcaa 233  Q
    |||||||||||||||||||||| ||| ||||||||||||||| |||||||||||    
T  22685822 agagcatcaagccctcaactttaataggaatgattatacattccagagcatcaa 22685875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 45679516 - 45679572
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| |||||| |||||||||||||||||| ||||| ||||||||    
T  45679516 agagcatcaagccctctactttaatatgaatgattatacattccagagtatcaagcc 45679572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 22685780 - 22685834
Alignment:
Q  183 agcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||| |||||||||||| || ||||||||||||||| ||||||||||||||    
T  22685780 agcatcaatccctcaactttaataggaatgattatacattccagagcatcaagcc 22685834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 25085436 - 25085485
Alignment:
Q  187 tcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||| |||||||| |||||||||| |||||| ||||||||||||||    
T  25085436 tcaagcccccaactttaaatgaatgattgtacattccagagcatcaagcc 25085485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 25587866 - 25587825
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  25587866 aatatgcatgtggtaccaatcagggcatcaagcccccaactt 25587825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 22685866 - 22685922
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||| |||  ||||||| || ||||||||||||||| ||||||||||||||    
T  22685866 agagcatcaatccccaaactttaatacgaatgattatacattccagagcatcaagcc 22685922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 29044183 - 29044260
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaacttt-atatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||||  |||||||||||||    
T  29044183 aatatgcatgtggtaccaatcacagcatcaaaccctcaactttaatatgaatgattatacattctagagcatcaagcc 29044260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 29044247 - 29044304
Alignment:
Q  180 tagagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  29044247 tagagcatcaagccctcaactttagtatgaatgattatacattccagagcatcaagcc 29044304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 12419621 - 12419564
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcca 237  Q
    ||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||    
T  12419621 agagcatcaagccctcaactttaatgtgaatgattatacattccagagcatcaagcca 12419564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 12420025 - 12420082
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcca 237  Q
    ||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||    
T  12420025 agagcatcaagccctcaactttaatgtgaatgattatacattccagagcatcaagcca 12420082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 19234371 - 19234408
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  19234371 gcatcaagcccccaactttatatgaatgattatacatt 19234408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 30674449 - 30674408
Alignment:
Q  180 tagagcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  30674449 tagagcatcaagcccccaactttatataaatgattatacatt 30674408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 18458190 - 18458139
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||| |||||| |||||||||||||||||||  |||||||||||||    
T  18458190 gcatcaagcccccaactt-atatgaatgattatacattctagagcatcaagcc 18458139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 21680888 - 21680852
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacat 220  Q
    |||||||||||||||||| ||||||||||||||||||    
T  21680888 gcatcaagccctcaacttaatatgaatgattatacat 21680852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 6083798 - 6083761
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  6083798 gcatcaagcccgcaacttaatatgaatgattatacatt 6083761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 19234280 - 19234321
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  19234280 aatatgcatgtggtaccaatcagggcatcaagcccccaactt 19234321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 25920617 - 25920654
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  25920617 gcatcaagcccccaactttatatgaatgaatatacatt 25920654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 25920662 - 25920699
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  25920662 gcatcaagcccccaactttatatgaatgaatatacatt 25920699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 15942 - 15994
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  15942 gcatcaagccctcaacttaatatgaatgattatacattccagagcatcaagcc 15994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 65039 - 64984
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||    
T  65039 agagcatcaaaccctcaactttaaatgaatgattatacattccagagcatcaagcc 64984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 65076 - 65030
Alignment:
Q  187 tcaagccctcaactttatatgaatgattatacatttcagagcatcaa 233  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||||    
T  65076 tcaagcccccaactttaaatgaatgattatacattccagagcatcaa 65030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 16062407 - 16062458
Alignment:
Q  185 catcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  16062407 catcaagccctcaactttaaatgaatgattatacattccagagcatcaagcc 16062458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 16062446 - 16062502
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  16062446 agagcatcaagccctctactttaatatgaatgattatacattccagagcatcaagcc 16062502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 21402028 - 21401972
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||    
T  21402028 agagcatcaagccttcaactttaatatgaatgattatacattccagagcatcaagcc 21401972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 26749004 - 26749057
Alignment:
Q  184 gcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||||||||||    
T  26749004 gcatcaagccctcaactttaatataaatgattatacattccagagcatcaagcc 26749057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 21401984 - 21401928
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||| |||||||    
T  21401984 agagcatcaagccctctactttaatatgaatgattatacattccagagcgtcaagcc 21401928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 20198794 - 20198757
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20198794 gcatcaagccctcaacttaatatgaatgattatacatt 20198757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 22110769 - 22110806
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  22110769 gcatcaagcccccaactttatatgaatgattatacatt 22110806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 26761445 - 26761496
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||    
T  26761445 gcatcaagcccccaactt-atatgaacgattatacattccagagcatcaagcc 26761496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 8834325 - 8834282
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaacttta 203  Q
    |||||||||||||||||||| || ||||||||||| ||||||||    
T  8834325 aatatgcatgtggtaccaatcagggcatcaagcccccaacttta 8834282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 8834216 - 8834170
Alignment:
Q  187 tcaagccctcaactttatatgaatgattatacatttcagagcatcaa 233  Q
    |||||||| |||||||| ||||||||||||||||| |||| ||||||    
T  8834216 tcaagcccccaactttaaatgaatgattatacattccagaacatcaa 8834170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 26748938 - 26748979
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  26748938 aatatgcatgtggtaccaatcagggcatcaagcccccaactt 26748979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 20470264 - 20470228
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    ||||||||||||||||  |||||||||||||||||||    
T  20470264 atgcatgtggtaccaacaagagcatcaagccctcaac 20470228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 326 - 398
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagc 235  Q
    ||||||| ||||| ||  || ||||||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  326 atgcatgcggtacaaaccagggcatcaagcccccaactttaaatgaatgattatacattccagagcatcaagc 398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 5832 - 5904
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagc 235  Q
    ||||||| ||||| ||  || ||||||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  5832 atgcatgcggtacaaaccagggcatcaagcccccaactttaaatgaatgattatacattccagagcatcaagc 5904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 387 - 442
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||| || | ||||| ||||||||||||||||| ||| ||||||||||    
T  387 agagcatcaagcactaatctttaaatgaatgattatacattccagtgcatcaagcc 442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 5893 - 5948
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||| || | ||||| ||||||||||||||||| ||| ||||||||||    
T  5893 agagcatcaagcactaatctttaaatgaatgattatacattccagtgcatcaagcc 5948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 9618 - 9658
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatt 221  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9618 agagcatcaagccctcaactttatatgaatgattatacatt 9658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 16810 - 16850
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatt 221  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  16810 agagcatcaagccctcaactttatatgaatgattatacatt 16850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 9487 - 9528
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  9487 aatatgcatgtggtaccaatcagggcatcaagcccccaactt 9528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 16679 - 16720
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  16679 aatatgcatgtggtaccaatcagggcatcaagcccccaactt 16720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 4921 - 4885
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  4921 atgcatgtggtaccaactagtgcatcaagccctcaac 4885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 27308 - 27364
Alignment:
Q  181 agagcatcaagccctcaacttta-tatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  27308 agagcatcaagccctctactttaatatgaatgattatacattccagagcatcaagcc 27364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 24632 - 24672
Alignment:
Q  181 agagcatcaagccctcaacttt-atatgaatgattatacat 220  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  24632 agagcatcaagccctctactttaatatgaatgattatacat 24672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 56063 - 56115
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  56063 gcatcaagccctcaactttaaatgaatggttatacattccagagcatcaagcc 56115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 55919 - 55959
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaacttta 203  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  55919 atgcatgtggtaccaatcagggcatcaagcccccaacttta 55959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 1851 - 1888
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1851 gcatcaagccctcaactttatatgaatgattatacatt 1888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 1806 - 1843
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    |||||||||||  |||||||||||||||||||||||||    
T  1806 gcatcaagcccctaactttatatgaatgattatacatt 1843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 27651 - 27614
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27651 gcatcaagccctcaactttatatgaatgattatacatt 27614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 10264 - 10231
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattata 217  Q
    ||||||||||| ||||||||||||||||||||||    
T  10264 gcatcaagcccccaactttatatgaatgattata 10231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 10355 - 10314
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  10355 aatatgcatgtggtaccaatcagggcatcaagcccccaactt 10314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 27696 - 27659
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  27696 gcatcaaacccccaactttatatgaatgattatacatt 27659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 11333 - 11281
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||| |||||||| ||||||||||||||| | ||||||||||||||    
T  11333 gcatcaagcccccaactttaaatgaatgattatacagtccagagcatcaagcc 11281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 17106 - 17066
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  17106 agagcatcaagccctgaactttatatgaatgattatacatt 17066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 17013 - 16960
Alignment:
Q  185 catcaagccctcaactttatatgaatgattatacatt--tcagagcatcaagcc 236  Q
    ||||||||| |||||||||||||||||||||||||||   ||||||||||||||    
T  17013 catcaagccatcaactttatatgaatgattatacattcaacagagcatcaagcc 16960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 17195 - 17155
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatt 221  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  17195 agagcatcagaccctcaactttatatgaatgattatacatt 17155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 49039 - 49076
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  49039 gcatcaagcccccaactttatatgaatgattatacatt 49076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 95294 - 95349
Alignment:
Q  181 agagcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    ||||||||||||||||||| | ||||| |||| ||||||||  |||||||||||||    
T  95294 agagcatcaagccctcaacgtaatatgtatgaatatacattctagagcatcaagcc 95349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 7906 - 7952
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatttcagagcat 230  Q
    ||||||| ||| |||||||| ||||||||||||||||| ||||||||    
T  7906 gcatcaaacccccaactttaaatgaatgattatacattccagagcat 7952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 10356 - 10318
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  10356 atgcatgtggtaccaatcagggcatcaagccctcaactt 10318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 461 - 424
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  461 gcatcaagctctcaacttaatatgaatgattatacatt 424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 1659 - 1700
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||    
T  1659 aatatgcatgtggtaccaattagggcatcaaacccccaactt 1700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 7522 - 7485
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatt 221  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  7522 gcatcaagccctcaacttaatatgaatgatgatacatt 7485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 18072 - 18113
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||| ||||||||||    
T  18072 aatatgcatgtggtaccaatcagggcatcaatccctcaactt 18113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 25470 - 25511
Alignment:
Q  160 aatatgcatgtggtaccaattagagcatcaagccctcaactt 201  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  25470 aatatgcatgtggtaccaatcagggcatcaagcccccaactt 25511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1815 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1815
Description:

Target: scaffold1815; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 940 - 976
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    ||||||||||||||||  |||||||||||||||||||    
T  940 atgcatgtggtaccaaccagagcatcaagccctcaac 976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1633 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1633
Description:

Target: scaffold1633; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 284 - 336
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| | ||||| || |||||||||| ||| ||||||||||    
T  284 gcatcaagccctcaacataatatgtataattatacattacagggcatcaagcc 336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 1382 - 1434
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| | ||||| || | |||||||| ||||||||||||||    
T  1382 gcatcaagccctcaacataatatgtataaatatacattacagagcatcaagcc 1434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0630
Description:

Target: scaffold0630; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 8013 - 8049
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    ||||||||||||||||  |||||||||||||||||||    
T  8013 atgcatgtggtaccaaccagagcatcaagccctcaac 8049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 323 - 283
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaacttta 203  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  323 atgcatgtggtaccaatcagggcatcaagcccccaacttta 283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 7913 - 7949
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  7913 atgcatgtggtaccaactagggcatcaagccctcaac 7949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 14071 - 14107
Alignment:
Q  163 atgcatgtggtaccaattagagcatcaagccctcaac 199  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  14071 atgcatgtggtaccaactagggcatcaagccctcaac 14107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 76717 - 76769
Alignment:
Q  184 gcatcaagccctcaactttatatgaatgattatacatttcagagcatcaagcc 236  Q
    |||||||||||||||| | ||||| || | |||||||| ||||||||||||||    
T  76717 gcatcaagccctcaacataatatgtataaatatacattacagagcatcaagcc 76769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 6700 times since January 2019
Visitors: 5770