View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_47 (Length: 283)
Name: NF0775_low_47
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 27514606 - 27514492
Alignment:
| Q |
40 |
agcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaac-aatgtccaatacaaagcttccacttgctaccaaatgagatg |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27514606 |
agcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatg |
27514507 |
T |
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| Q |
139 |
tcagcctcatatttc |
153 |
Q |
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||||||||||||||| |
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| T |
27514506 |
tcagcctcatatttc |
27514492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 27468755 - 27468855
Alignment:
| Q |
40 |
agcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaac-aatgtccaatacaaagcttccacttgctaccaaatgagatg |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27468755 |
agcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatg |
27468854 |
T |
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| Q |
139 |
t |
139 |
Q |
| |
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| |
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|
| T |
27468855 |
t |
27468855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 27524243 - 27524146
Alignment:
| Q |
42 |
catagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgt |
139 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
27524243 |
catagggataaggtagcatgtggtgttgtcttagagtgtaccctaccttcttaaacaatatccaatacaaagcttccaattgctaccaaatgagatgt |
27524146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 27508587 - 27508487
Alignment:
| Q |
40 |
agcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgt |
139 |
Q |
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||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27508587 |
agcatagtgataaggtagcatgtggtgctgtcttagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttcctaccaaatgagatgt |
27508488 |
T |
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| Q |
140 |
c |
140 |
Q |
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| |
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| T |
27508487 |
c |
27508487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 27475988 - 27476088
Alignment:
| Q |
40 |
agcatagggataaggtctcatgtggtgttgtctaagagtgtaccctacctt-cttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatg |
138 |
Q |
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|||| ||||||||||| |||| |||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
27475988 |
agcacagggataaggtagcatggggtgttgtcttagagtgtaccctacctttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatg |
27476087 |
T |
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| Q |
139 |
t |
139 |
Q |
| |
|
| |
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|
| T |
27476088 |
t |
27476088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 27503642 - 27503544
Alignment:
| Q |
42 |
catagggataaggtctcatgtggtgttgtctaagagtgtaccctacctt-cttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgt |
139 |
Q |
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||||||||||| || ||||||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
27503642 |
catagggataatgtagcatgtggtgttgtcttagagtgtcccctacctttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatgt |
27503544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 27517448 - 27517369
Alignment:
| Q |
58 |
catgtggtgttgtct-aagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgaga |
136 |
Q |
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||||||| ||||||| |||| ||||||| ||||||| |||||||| |||| |||||||||||||||| ||||| ||||| |
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| T |
27517448 |
catgtggcgttgtcttaagattgtaccccaccttctcaaacaatggccaacacaaagcttccacttggaaccaattgaga |
27517369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 149 - 268
Target Start/End: Original strand, 49274232 - 49274351
Alignment:
| Q |
149 |
atttcactatgatttgatgtaaataatgagtaaacaatctattggtcccttaatgtgagaggtggggtcattacggtccttaaatgtattgaaacttcaa |
248 |
Q |
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|||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||||||| |
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| T |
49274232 |
atttcattatgatttgatgcaaataatgagtaaacaacctattggtcccttaatgtgagagatggtgtcattatgatccttaaatgtattgaaacttcaa |
49274331 |
T |
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| Q |
249 |
aacatctatgaatgtgtttt |
268 |
Q |
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||||||| ||||||||||| |
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| T |
49274332 |
aacatctgcgaatgtgtttt |
49274351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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