View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_5 (Length: 464)
Name: NF0775_low_5
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 3483995 - 3484377
Alignment:
| Q |
1 |
agaggagaagcaaagggaatatacgatagatgctactcttgactttgnnnnnnngggatttagaaatatattttcattctacttcaatttatatgttaat |
100 |
Q |
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| T |
3483995 |
agaggagattcaaagggaatatacgatagatgctactcttgactttgtttttttgggatttagaaatatattttcattctacttcaatttatatgtta-- |
3484092 |
T |
|
| Q |
101 |
taggagagtaggtaatcatatgcccaatgaactagctaggtttcctgttagacaacaagctgaacaaatttctcatatgttgttcaatcaatttgtagtt |
200 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3484093 |
--ggagagtaggtaatcatatggccaacgaactagctaggtttcctgttagacaacaagttgaacaaatttctcatatgttgttcaatcaatttgtagtt |
3484190 |
T |
|
| Q |
201 |
ttttggtattgacttttgaggaacatttgtacattttttacaacgaagtggttgataagttacaattatgtgatattttaaatttttaatatgacatgtt |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3484191 |
ttttggtattgacttttgaagaacatttgtacattttttacaacaaagtggttgataagttacaattatgtgatattttaaatttttaatatgacatgtt |
3484290 |
T |
|
| Q |
301 |
ttttatgtcnnnnnnnttactccattaaaaggtggaaatagtcatgggcttaaaatgagtctgcttcagattcaaatcagttcatac |
387 |
Q |
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| T |
3484291 |
ttttatgtcaaaaaaattactccattaaagggtggaaatagtcaagggcttaaaatgagtctgcttcagattcaaatcagttcatac |
3484377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 3485101 - 3485160
Alignment:
| Q |
199 |
ttttttggtattgacttttgaggaacatttgtacattttttacaacgaagtggttgataa |
258 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3485101 |
ttttttggttttgatttttgaggaacatttgtacattttttacaacaaagtggttgataa |
3485160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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