View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0775_low_53 (Length: 273)
Name: NF0775_low_53
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0775_low_53 |
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| [»] scaffold0156 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 21376244 - 21376100
Alignment:
| Q |
31 |
agaggagaaaagagtcattcttccaggtttgtttaacagtctattcttccaagaagcaagacaagattgcattttctcaataataaaatagaaatcannn |
130 |
Q |
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| T |
21376244 |
agaggaggcaagagtcattcttccagatttgtttaacagtttattcttccaagaagcaagacaagattgctttttctcaataataaaatagaaatcattc |
21376145 |
T |
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| Q |
131 |
nnnnnncgatattccttcgacacccattgattttaatacaatgca |
175 |
Q |
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| T |
21376144 |
ttttttcgctattccttcgacactcattgattttaatacaatgca |
21376100 |
T |
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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 35062718 - 35062778
Alignment:
| Q |
67 |
cagtctattcttccaagaagcaagacaagattgcattttctcaataataaaatagaaatca |
127 |
Q |
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| T |
35062718 |
cagtctattcttccaagaagcaagtctatattgcattttctcaataataaaataaaaatca |
35062778 |
T |
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Target: scaffold0156 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0156
Description:
Target: scaffold0156; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 17722 - 17774
Alignment:
| Q |
74 |
ttcttccaagaagcaagacaagattgcattttctcaataataaaatagaaatc |
126 |
Q |
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| T |
17722 |
ttcttccaagaagcaagtctagtttacattttctcaataataaaatagaaatc |
17774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 9535278 - 9535191
Alignment:
| Q |
40 |
aagagtcattcttccaggtttgtttaacagtctattcttccaagaagcaagacaagattgcattttctcaataataaaatagaaatca |
127 |
Q |
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| T |
9535278 |
aagagtcaatctatcaggtttgtttagcaatctattcttccaaaaagcgagtctgaattgcattatctcaataataaaataaaaatca |
9535191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 27781206 - 27781285
Alignment:
| Q |
40 |
aagagtcattcttccaggtttgtttaacagtctattcttccaagaagcaagacaagattgcattttctcaataataaaat |
119 |
Q |
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| T |
27781206 |
aagagccaatcttccaggtttatttaacaatttgttcttccaataagcaagacgagtatgcattttgtcaataacaaaat |
27781285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 125
Target Start/End: Original strand, 1353424 - 1353452
Alignment:
| Q |
97 |
ttgcattttctcaataataaaatagaaat |
125 |
Q |
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| T |
1353424 |
ttgcattttctcaataataaaatagaaat |
1353452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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