View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0775_low_58 (Length: 265)

Name: NF0775_low_58
Description: NF0775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0775_low_58
NF0775_low_58
[»] chr2 (5 HSPs)
chr2 (25-223)||(17312176-17312374)
chr2 (25-223)||(38619612-38619810)
chr2 (25-222)||(10924581-10924778)
chr2 (48-223)||(26263162-26263336)
chr2 (25-104)||(26886308-26886387)
[»] chr1 (5 HSPs)
chr1 (25-218)||(50515699-50515892)
chr1 (25-223)||(44712770-44712968)
chr1 (25-223)||(45910195-45910393)
chr1 (49-218)||(16767456-16767625)
chr1 (48-177)||(44827481-44827610)
[»] chr8 (5 HSPs)
chr8 (25-223)||(754442-754640)
chr8 (25-223)||(23710194-23710392)
chr8 (25-148)||(9173478-9173601)
chr8 (143-223)||(9140186-9140266)
chr8 (31-170)||(40455900-40456039)
[»] chr3 (3 HSPs)
chr3 (25-223)||(52972116-52972314)
chr3 (20-223)||(6161725-6161928)
chr3 (31-219)||(54586780-54586968)
[»] chr5 (8 HSPs)
chr5 (25-223)||(13850388-13850586)
chr5 (31-229)||(38965995-38966193)
chr5 (25-152)||(34833634-34833761)
chr5 (25-150)||(20235921-20236046)
chr5 (108-191)||(23352093-23352176)
chr5 (25-134)||(25761605-25761714)
chr5 (181-223)||(34833593-34833635)
chr5 (119-219)||(31045305-31045405)
[»] chr7 (4 HSPs)
chr7 (25-221)||(41257032-41257228)
chr7 (25-223)||(19215895-19216093)
chr7 (118-223)||(15890869-15890974)
chr7 (47-115)||(15889534-15889602)
[»] chr4 (1 HSPs)
chr4 (75-223)||(46223678-46223826)
[»] chr6 (1 HSPs)
chr6 (48-218)||(24132857-24133027)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 17312374 - 17312176
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  17312374 tgttgctgtttgtatcgactagcgagaacattttaccactaaacacaagtttgcaacacggaatgatttgttggagtgggttggagagaaagctaggaag 17312275  T
Q  125 cttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacaccgag 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||    
T  17312274 cttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcacatttgttactttgatatgtgaaaggggaggttcatacaccgag 17312176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 38619612 - 38619810
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38619612 tgttgctgtttgtatcgaccagcgagaacattttactgctaaacacaagtttgcaacacggaatgatttgttggagtgggttggagagaaatctaggaag 38619711  T
Q  125 cttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacaccgag 223  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||    
T  38619712 cttggtttttccactattattggtaaatccgataacagtggcaatggaagaagcgcatttgttactttgatatgtgaaaggggaggttcatacatcgag 38619810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 10924581 - 10924778
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||| ||||||||| ||  | |||||| |||||||||| ||||| |||||||| ||||  || |||||||||||||||||| ||||| || | ||||||    
T  10924581 tgttgttgtttctattgatgatcgagaatattttaccaccaaacaaaagtttgctacacagaacgatttgttggagtgggttcgagaggaagcaaggaag 10924680  T
Q  125 cttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacaccga 222  Q
    || |  ||||  || |||||||||||||| ||||| ||||||||||||||||   ||||||||||| |||||||||| |  |||||||||||||||||    
T  10924681 ctagaattttaaaccgttattggtaaatcagataaaggtggcaatggaagaaatgcatttgttactatgatatgtgaaagaggaggttcatacaccga 10924778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 26263162 - 26263336
Alignment:
Q  48 gagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaagcttggtttttccactgttattgg 147  Q
    |||||||||||||||| ||||| | |||||| ||||  || |||||||||||||||||| ||||| || | |||||||| || ||||| ||  |||||||    
T  26263162 gagaacattttaccaccaaacaaaggtttgctacacataacgatttgttggagtgggttcgagaggaagcaaggaagctaggattttcaacc-ttattgg 26263260  T
Q  148 taaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacaccgag 223  Q
    |||||| ||||| ||||| |||||||||||  ||||||||||| |||||||||| |  | ||||||||||||||||    
T  26263261 taaatcagataaaggtggaaatggaagaagtgcatttgttactgtgatatgtgaaagagaaggttcatacaccgag 26263336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 26886308 - 26886387
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtggg 104  Q
    ||||| ||||||||| || || |||||| |||||||||  ||||| |||||| | |||||||| ||||||||||||||||    
T  26886308 tgttgttgtttctattgatcatcgagaatattttaccatcaaacagaagtttactacacgaaacgatttgttggagtggg 26886387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 50515699 - 50515892
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  50515699 tgttgctgtttgtatcgaccagcgagaacattttaccactaaacacaagtttgcaacacggaatgatttgttggagtgggttggagagaaagctaggaag 50515798  T
Q  125 cttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcataca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||| | || |||||||||||    
T  50515799 cttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagtgcatttcttactttgatatgtgaaagggaaggttcataca 50515892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 44712968 - 44712770
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||    
T  44712968 tgttgctgtttgtatcaaccaacgagaacattttaccactaaacacaagtttgcaacacggaatgatttgttgaagtgggttggagagaaagctaggaag 44712869  T
Q  125 cttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacaccgag 223  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||    
T  44712868 cttggtttttccattgttattggtaaatccgataacagtggcaatggaagaagcgcatttgttactttgatatgtgaaaggggaggttcatacaccgag 44712770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 45910393 - 45910195
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||| ||||||||    
T  45910393 tgttgttgtttgtatcgaccagcgagaacattttaccactaaacacaagtttccaacacagaatgatttgttggagtgggttggagagaaagctaggaag 45910294  T
Q  125 cttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacaccgag 223  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||    
T  45910293 cttggtttttccactgttattggtaaatctgataacggtggcaatggaagaagcgcatttgttactttgatatgtgaaaggggaggttcatacatcgag 45910195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 218
Target Start/End: Complemental strand, 16767625 - 16767456
Alignment:
Q  49 agaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaagcttggtttttccactgttattggt 148  Q
    ||||||||||||||| ||  | |||||| | || || |||||||||||||||| |||| |||||||| | ||||||||||| ||| | |  || ||||||    
T  16767625 agaacattttaccacaaacaaaaagttttctacgcggaatgatttgttggagtaggttcgagagaaagcaaggaagcttggatttacaatcgtcattggt 16767526  T
Q  149 aaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcataca 218  Q
    ||||||||||| | || ||||||||||||  ||||||||||  |||||||||| |  |||||||||||||    
T  16767525 aaatccgataaagatgacaatggaagaagtgcatttgttaccgtgatatgtgaaataggaggttcataca 16767456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 44827481 - 44827610
Alignment:
Q  48 gagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaagcttggtttttccactgttattgg 147  Q
    ||||| |||||||||| || || |||||||  || || |||||||| |||||||||||| |||||||| | ||||||||||| ||| | || || |||||    
T  44827481 gagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttggatttacaaccgtcattgg 44827580  T
Q  148 taaatccgataacggtggcaatggaagaag 177  Q
    |||||||||||| |||| ||||||||||||    
T  44827581 taaatccgataaaggtgacaatggaagaag 44827610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 754442 - 754640
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| || |||||    
T  754442 tgttgctgtttgtattgaccagcgagaacattttaccactaaacacaagtttgcaaaacggaatgatttgttggagtgggttcgagagaaagcttggaag 754541  T
Q  125 cttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacaccgag 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||    
T  754542 cttggtttttccactgttattggtaaatccgataatggtggcaatggaagaagcgcatttgttactttgatatgtgaaatgggaggttcatacaccgag 754640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 23710392 - 23710194
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||| ||||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  23710392 tgttgttgtttgtattgatcagcgagaacattttaccactacacacaagtttgcaacacgaaatgatttgttggagtgggttcaagagaaagctaggaag 23710293  T
Q  125 cttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacaccgag 223  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| | |||||||||||||||||||    
T  23710292 ctcggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcgcctttgttaccttgatatgtgaaaggggaggttcatacaccgag 23710194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 9173601 - 9173478
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9173601 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 9173502  T
Q  125 cttggtttttccactgttattggt 148  Q
    |||||||||| |||||||||||||    
T  9173501 cttggttttttcactgttattggt 9173478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 9140266 - 9140186
Alignment:
Q  143 attggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacaccgag 223  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| |||||||||||||    
T  9140266 attggtaaatccgataacggtggcaatggaagaagctcatttgttactttgatatgtgaaaggggagtttcatacaccgag 9140186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 40456039 - 40455900
Alignment:
Q  31 tgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaagcttggt 130  Q
    ||||||||| || || |||||||| |||||||| ||||| |||||||  || |||||  |||||||||||||||||  |||| || | |||||| | ||     
T  40456039 tgtttctattgatcatcgagaacagtttaccaccaaacaaaagtttgttacgcgaaacaatttgttggagtgggttcaagaggaagcaaggaagttagga 40455940  T
Q  131 ttttccactgttattggtaaatccgataacggtggcaatg 170  Q
    ||||| |||||||||| |||||| ||||| ||||| ||||    
T  40455939 ttttcaactgttattgataaatcagataaaggtggaaatg 40455900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 52972314 - 52972116
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  52972314 tgttgctgtttgtatcgactagcgagaacattttactactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaagctagaaag 52972215  T
Q  125 cttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacaccgag 223  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |  || |||||||||||||||    
T  52972214 cttggtttttccactgttattggtaaatccgataacggtagcaatggaagaagcgcatttgttactttgatatgtgaaagagggggttcatacaccgag 52972116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 6161928 - 6161725
Alignment:
Q  20 ctagctgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatcta 119  Q
    |||| |||| |||||| ||| |||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||| |||||||| |||    
T  6161928 ctagttgtttctgtttgtattgaccagcgagaacattttaccaataagcaaaagtttgcaacacggaatgatttgttggagtgggttcgagagaaagcta 6161829  T
Q  120 ggaagcttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacac 219  Q
    | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||    
T  6161828 gcaagcttggtttttccactgttattggtaaattcgataacggtggcaatggaagaagcacatttgttactttgatatgtgaaatgggaggttcatacac 6161729  T
Q  220 cgag 223  Q
    ||||    
T  6161728 cgag 6161725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 31 - 219
Target Start/End: Original strand, 54586780 - 54586968
Alignment:
Q  31 tgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaagcttggt 130  Q
    ||||| ||| || |||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||| |||||||||| |||    
T  54586780 tgtttgtattgatcagcgagaacattttaccactacacacaagtttgcaacacataatgatttgttggagtgggttcgagagaaagctaggaagctcggt 54586879  T
Q  131 ttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacac 219  Q
    |||| || |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||    
T  54586880 ttttacattgttattggtaaatccgataacggtggcaatggaagaaacacatttgttactttgatatgtgaaaggggaggttcatacac 54586968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 13850586 - 13850388
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||    
T  13850586 tgttgctgtttatatcgaccagcgaaaacattttaccactaaacacaagtttgcaacatggaatgatttgttggagtgggttggagagaaagctaggaag 13850487  T
Q  125 cttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacaccgag 223  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  | ||||||||| ||||||||| | ||| |||||||||||||||    
T  13850486 cttggtttttccactgttattggtaaatccgataatggtggcaatggaagaagcgtagttgttacttcgatatgtgaaaggggtggttcatacaccgag 13850388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 31 - 229
Target Start/End: Original strand, 38965995 - 38966193
Alignment:
Q  31 tgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaagcttggt 130  Q
    ||||| ||| || |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||| |||    
T  38965995 tgtttgtattgatcagcgagaacattttaccactacacataagtttgcaacacggaatgatttgttggagtgagttcgagagaaagctaggaagctcggt 38966094  T
Q  131 ttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacaccgagcacagg 229  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||    
T  38966095 ttttccactgttattgttaaatccgataacggtggcaatggaagaagcgcattggttactttgatatgtgaaaagggaggttcatacaccgagtacagg 38966193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 34833761 - 34833634
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||    
T  34833761 tgttgttgtttgtatcgaccagcgagaacattttaccactaaacacaagtttgcaacacggaatgatttgttgaagtgggttggagagaaagctagaaag 34833662  T
Q  125 cttggtttttccactgttattggtaaat 152  Q
    |||||||||||||||||||| |||||||    
T  34833661 cttggtttttccactgttatcggtaaat 34833634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 20236046 - 20235921
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||||||||| |||| | || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||    
T  20236046 tgttgctgtttgtatcaaacaacgagaacattttaccactaaacacaagtttgcaacacggaatgatttgttggagtgggttagagagaaagctaggaag 20235947  T
Q  125 cttggtttttccactgttattggtaa 150  Q
    |||||||||| |||||||||||||||    
T  20235946 cttggttttttcactgttattggtaa 20235921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 23352176 - 23352093
Alignment:
Q  108 gagagaaatctaggaagcttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactt 191  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23352176 gagagaaagctaggaagcttggtttttccattgttattggtaaatccgataacggtggcaatggaagaagcgcatttgttactt 23352093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 25761605 - 25761714
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    |||| |||||| ||||||||| ||||||||||||||||||||| |||||||||||||||  |||||||||||||||| ||||||||||||| ||| ||||    
T  25761605 tgttcctgtttgtatcgaccaacgagaacattttaccactaaagacaagtttgcaacacagaatgatttgttggagttggttggagagaaagctaagaag 25761704  T
Q  125 cttggttttt 134  Q
    |||| |||||    
T  25761705 cttgattttt 25761714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 34833635 - 34833593
Alignment:
Q  181 atttgttactttgatatgtgagaagggaggttcatacaccgag 223  Q
    ||||||||||||||||||||| | |||||||||||||||||||    
T  34833635 atttgttactttgatatgtgaaaggggaggttcatacaccgag 34833593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 31045405 - 31045305
Alignment:
Q  119 aggaagcttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcataca 218  Q
    |||||||| |||||||| || |||||||||||||| ||||  ||||| ||||| | ||   ||||||||| | |||||||| | |  |||||||||||||    
T  31045405 aggaagctaggtttttcaaccgttattggtaaatcagatagaggtggaaatgggataaatgcatttgttattgtgatatgtaaaagaggaggttcataca 31045306  T
Q  219 c 219  Q
    |    
T  31045305 c 31045305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 41257228 - 41257032
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |||||||| |||  |||    
T  41257228 tgttgctgtttgtatcgaccaacgagaacattttaccactaaacacaggtttgcaacacggaacgatttgttggagtgggttagagagaaagctaaaaag 41257129  T
Q  125 cttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacaccg 221  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||||||||    
T  41257128 cttggtttttccactgttattggtaaatctgataacggtggcaatggaagaagcacatttgttactttgatatgtgaaagaggaggttcatacaccg 41257032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 19215895 - 19216093
Alignment:
Q  25 tgttgctgtttctatcgaccagcgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaag 124  Q
    ||||| ||||| |||| |||| ||| || ||||||||| ||||||||||||||||||||  ||||||||||||||||||| | |||||||| ||||||||    
T  19215895 tgttgttgtttgtatcaaccaacgaaaatattttaccattaaacacaagtttgcaacacataatgatttgttggagtgggatagagagaaagctaggaag 19215994  T
Q  125 cttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatacaccgag 223  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| ||||||| | |||||||||||||||||||    
T  19215995 cttgatttttccactgttattggtaaatccgataacggtggcaattgaagaaacgcatttgttactttggtatgtgaaaggggaggttcatacaccgag 19216093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 118 - 223
Target Start/End: Original strand, 15890869 - 15890974
Alignment:
Q  118 taggaagcttggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcatac 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| | |||||||| ||||    
T  15890869 taggaagctcggtttttccactgttattggtaaatccgataacggtgacaattgaagaagcgcatttgttactttgatatgtgaaaggggaggtttatac 15890968  T
Q  218 accgag 223  Q
    ||||||    
T  15890969 accgag 15890974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 15889534 - 15889602
Alignment:
Q  47 cgagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaa 115  Q
    ||||||||||||||||||| |||||||||||| ||||  ||||||||||||||||  ||| ||||||||    
T  15889534 cgagaacattttaccactacacacaagtttgctacacataatgatttgttggagtccgttcgagagaaa 15889602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 75 - 223
Target Start/End: Original strand, 46223678 - 46223826
Alignment:
Q  75 ttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaagcttggtttttccactgttattggtaaatccgataacggtggcaatggaag 174  Q
    ||||||||| ||||||||||||||||||| || ||||||||  ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  46223678 ttgcaacacaaaatgatttgttggagtggattcgagagaaagttaggaagctcggtttttccactgttattggtaaatccgataacggtagcaatggaag 46223777  T
Q  175 aagcccatttgttactttgatatgtgagaagggaggttcatacaccgag 223  Q
    |||| |||||||||||||||||||||| |  || |||||||||||||||    
T  46223778 aagcacatttgttactttgatatgtgaaagagggggttcatacaccgag 46223826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 24133027 - 24132857
Alignment:
Q  48 gagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaagcttggtttttccactgttattgg 147  Q
    |||||||||| ||||| ||  | |||||| | || || ||||||||||||||||||||| ||| |||| | | |||   ||| ||| |  | || ||||     
T  24133027 gagaacatttaaccaccaagaaaaagtttactactcggaatgatttgttggagtgggttcgagggaaagcaaagaaatgtggatttacatccgtcattgc 24132928  T
Q  148 taaatccgataacggtggcaatggaagaagcccatttgttactttgatatgtgagaagggaggttcataca 218  Q
    |||||||||||| |||||||||||||||||  |||| |||||  |||||||||| |  |||||||||||||    
T  24132927 taaatccgataaaggtggcaatggaagaagtgcattcgttaccgtgatatgtgaaagaggaggttcataca 24132857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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